DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptprm and Ptp99A

DIOPT Version :9

Sequence 1:NP_001344554.1 Gene:Ptprm / 19274 MGIID:102694 Length:1486 Species:Mus musculus
Sequence 2:NP_651691.4 Gene:Ptp99A / 43469 FlyBaseID:FBgn0004369 Length:1397 Species:Drosophila melanogaster


Alignment Length:1414 Identity:362/1414 - (25%)
Similarity:562/1414 - (39%) Gaps:367/1414 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse   181 PCTRTPHFLRIQN---VEVN--AGQFATFQCSAIGRTVAGDRL-W----------LQGIDVRDAP 229
            |.|:......:.|   |:||  ||:..|..|..:......|.| |          ...|.:..:|
  Fly    30 PATQAGRIFDVTNLDYVKVNAEAGKNVTIPCPGVNEHSLVDTLVWKTASTTIAQFANRIPLLHSP 94

Mouse   230 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI----CTEGGVGISNYAELVVKEPPVPIAPPQL 290
              .|::.|. .|...|:  .:...|..:|.|::    ..|..|      :|:|::.|.|...|  
  Fly    95 --RIQLLSD-NFGLQFS--PSLASDTSEYICLVNDRHIPEAIV------DLLVQDVPDPPERP-- 146

Mouse   291 ASVGATYLWIQLNANSIN---------GDGPIV-----AREVEYCTASGSWNDRQPV----DSTS 337
                   |.|...:.|:|         .:.|:.     .||.|    .|.|.....:    ::||
  Fly   147 -------LLISFTSRSVNLSWAHSQHPRNAPVTHFIIETREGE----DGIWEQLARIYTKTNATS 200

Mouse   338 YKIGHLDPDTEYEISVL------LTRPG----------EGGTGSPGPALRTRTKCADPMRGPRKL 386
            |::..|.|.|.|...:|      ::.|.          |..||.|.|.....|            
  Fly   201 YQVTGLTPFTVYSFRLLAVNKLGISPPSKESYYIVTLREAPTGKPIPTTAHNT------------ 253

Mouse   387 EVVEVKSRQITIRW----------EPFGYNVTRCHSYNLTVHYGYQVGGQEQVREEVSWDTDNSH 441
                 .|..:.|.|          |..||.:|            |:...::....:..:..||:.
  Fly   254 -----SSTSVYISWKAPPPDTILGEFLGYRIT------------YRPRDRDPNDTKEIYIRDNTV 301

Mouse   442 PQHTITNLSPYTNVSVKLILMNPEGRKESQELTVQTDEDLPGAVPTESIQGSAFEEKIFLQWREP 506
            ..|.|.||..||...|.:.:.||||......:.|.|||.:|......:|. ......|.:.|..|
  Fly   302 ESHEIQNLQTYTQYKVTVQVFNPEGLGPETTILVMTDEGVPSKPQNLTIL-DVSANSITMSWHPP 365

Mouse   507 TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF 571
            ....|.|..|.:.:...:....|| :.|....|..|   .||....|.|.|.|...::|.|.|..
  Fly   366 KNQNGAIAGYHVFHIHDNQTGVEI-VKNSRNSVETL---IHFELQNLRPYTDYRVIVKAFTTKNE 426

Mouse   572 GPPATNQFT--TKISAPSMPAYEFETPLNQTDNTVTVMLKPAQSRGAPVSVYQIVVEEERPRRTK 634
            |.| ::|..  |.:..||.||.     :|.|.:                |...|.:...||    
  Fly   427 GEP-SDQIAQRTDVGGPSAPAI-----VNLTCH----------------SQESITIRWRRP---- 465

Mouse   635 KTTEILKCYPVPIHFQNASILNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPHKSYR 699
                                  .::|...:|.....:.|...|                 |:..|
  Fly   466 ----------------------YEFYNTIDFYIIKTRLAGQDT-----------------HRDIR 491

Mouse   700 IYYQAASRANGETKIDCVRVATKAAIIVTQLTT-PYIRIAPAAGDGQLTGAVTPKPV-------- 755
            |        |...|      ..:.|:|:..||| .|..:..||.   ....:.||.:        
  Fly   492 I--------NASAK------ELETAMILQNLTTNSYYEVKVAAA---TFSVINPKKIVLGKFSES 539

Mouse   756 ------PEPEK------QTDHTVKIAGVIAGILL--FVIIFLGVVLVMKKRKLAKKRKETMSSTR 806
                  |..||      |:.:...:| |:.||:.  |.||.:.:...:..||             
  Fly   540 RIIQLQPNCEKLQPLLRQSHNDYNLA-VLVGIIFSCFGIILIIMAFFLWSRK------------- 590

Mouse   807 QEMTVMVNSMDKSYAEQGTNCDEAFSFMGTHNLNGRSVSSPSSFTMKTNTLSTSVPNSYYPDPFV 871
                                |..|..:                               |..||  
  Fly   591 --------------------CFHAAYY-------------------------------YLDDP-- 602

Mouse   872 PTAILDETHTMASDTSSLAQPHTYKKREAA-DVPYQTG-QLHPAIRVADLLQHITQMKCAEGYGF 934
                                ||.....:.. :||.:.| ::..|:.|.:..:|:..:......||
  Fly   603 --------------------PHHPNAPQVDWEVPVKIGDEIRAAVPVNEFAKHVASLHADGDIGF 647

Mouse   935 KEEYESFFE---GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQMLEGD-NNSDYINGNYIDG 995
            ..|||:...   ....|.:.::..||:.||||.||.|||||||.|....|. .|.||||.|:|||
  Fly   648 SREYEAIQNECISDDLPCEHSQHPENKRKNRYLNITAYDHSRVHLHPTPGQKKNLDYINANFIDG 712

Mouse   996 YHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP-DDTEIYKDIKVT 1059
            |.:.:.:|.||||:.:|...||||:|.:..|.|:|:|||||.||.||..||| |..|.|..|:|.
  Fly   713 YQKGHAFIGTQGPLPDTFDCFWRMIWEQRVAIIVMITNLVERGRRKCDMYWPKDGVETYGVIQVK 777

Mouse  1060 LIDTELLAEYVIRTFAV------EKRGIHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKS 1118
            ||:.|:::.|.:||..:      :|:..:..:.:.|:|:|.|||||.|.|...:|.||::..:.:
  Fly   778 LIEEEVMSTYTVRTLQIKHLKLKKKKQCNTEKLVYQYHYTNWPDHGTPDHPLPVLNFVKKSSAAN 842

Mouse  1119 PPNAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHD 1183
            |..|||:|||||||.||||.:||:|.||...:::.:|:::..:|.:|::|..:|||||||:|:||
  Fly   843 PAEAGPIVVHCSAGVGRTGTYIVLDAMLKQIQQKNIVNVFGFLRHIRAQRNFLVQTEEQYIFLHD 907

Mouse  1184 AILEACLCGDTSIPASQVRSLYYDMNKLDPQTNSSQIKEEFRTLNMVTPTLRVEDCSIALLPR-- 1246
            |::||...|:|::.|.||..|         :..:..::::::.:....|    :|..||...:  
  Fly   908 ALVEAIASGETNLMAEQVEEL---------KNCTPYLEQQYKNIIQFQP----KDIHIASAMKQV 959

Mouse  1247 NHEKNRCMDILPPDRCLPFLITIDGE-SSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVL 1310
            |..|||.. |.|.:.....|....|| .|:||||:.:..:::...|||||||:.:|:||||::|.
  Fly   960 NSIKNRGA-IFPIEGSRVHLTPKPGEDGSDYINASWLHGFRRLRDFIVTQHPMAHTIKDFWQMVW 1023

Mouse  1311 DYHCTSVVMLNDVDPAQLCPQYWPENGVHRHGPIQ-----VEFVSADLEEDIISRIFRIYNASRP 1370
            |::..:||:|:.:|..... |:||:...    ||:     |:|::...:.|.:||.|.|.:.   
  Fly  1024 DHNAQTVVLLSSLDDINFA-QFWPDEAT----PIESDHYRVKFLNKTNKSDYVSRDFVIQSI--- 1080

Mouse  1371 QDGHRM-VQQFQFLGWPMYRDTPVSKRSFLKLIRQVDKWQEEYNGGEGRTVVHCLNGGGRSGTFC 1434
            ||.:.: |:......||...    :..|....|..|.:...:|..|.  .|:....||.::.|||
  Fly  1081 QDDYELTVKMLHCPSWPEMS----NPNSIYDFIVDVHERCNDYRNGP--IVIVDRYGGAQACTFC 1139

Mouse  1435 AISIVCEMLRHQRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYL 1483
            |||.:...:.:..|.:|:...|...|.:|.:....:..:..|.: |.:|
  Fly  1140 AISSLAIEMEYCSTANVYQYAKLYHNKRPGVWTSSEDIRVIYNI-LSFL 1187

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity