DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptprm and Ptp69D

DIOPT Version :9

Sequence 1:NP_001344554.1 Gene:Ptprm / 19274 MGIID:102694 Length:1486 Species:Mus musculus
Sequence 2:NP_524048.2 Gene:Ptp69D / 39443 FlyBaseID:FBgn0014007 Length:1462 Species:Drosophila melanogaster


Alignment Length:1481 Identity:363/1481 - (24%)
Similarity:595/1481 - (40%) Gaps:306/1481 - (20%)


- Green bases have known domain annotations that are detailed below.


Mouse   188 FLRIQNV----EVNAGQFATFQCSA---------------------------IGRTVAGD----- 216
            |::.:||    :||......:.|:|                           |.|.:..|     
  Fly    90 FIKYKNVLALLDVNIKDSGNYTCTAQTGQNHSTEFQVRPYLPSKVLQSTPDRIKRKIKQDVMLYC 154

Mouse   217 --RLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV---NTT------------KRDAGKYRCMICT 264
              .::.|. :..:..||.:|..|...|:.:|:.:   |.|            |::.|.|:|.:..
  Fly   155 LIEMYPQN-ETTNRNLKWLKDGSQFEFLDTFSSISKLNDTHLNFTLEFTEVYKKENGTYKCTVFD 218

Mouse   265 EGGVGI-SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGP-----IVAREVEYCT- 322
            :.|:.| |....|.|.|.| .::.....:|||..:::....|  :|:.|     |..:|....| 
  Fly   219 DTGLEITSKEITLFVMEVP-QVSIDFAKAVGANKIYLNWTVN--DGNDPIQKFFITLQEAGTPTF 280

Mouse   323 ------ASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR---TKCAD 378
                  .:||        .|||.:.|..|:|.|.:.::    |:...|:..|....:   |...|
  Fly   281 TYHKDFINGS--------HTSYILDHFKPNTTYFLRIV----GKNSIGNGQPTQYPQGITTLSYD 333

Mouse   379 PMRGPRKLEVVEVKSRQITIRWEP-----FGYNVTRCHSYNLTVHYGYQVGGQEQVREEVSWDTD 438
            |:..| |:|.....:..|||.|.|     ..|    ...|.|.|.   :.|...:|.||..:..:
  Fly   334 PIFIP-KVETTGSTASTITIGWNPPPPDLIDY----IQYYELIVS---ESGEVPKVIEEAIYQQN 390

Mouse   439 NSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELTVQTDEDLPGAVP--TESIQGSAFE----- 496
            :.:..:....|...|:                .|..|:...||.....  :|::.|:..:     
  Fly   391 SRNLPYMFDKLKTATD----------------YEFRVRACSDLTKTCGPWSENVNGTTMDGVATK 439

Mouse   497 ----------------EKIFLQWREPTQTYGVITLY--EITYKAVSSFDPEIDLSNQSGRVSKLG 543
                            ..|.:.|..|....|.:..|  .:....:|:.|.|:    ...::.::.
  Fly   440 PTNLSIQCHHDNVTRGNSIAINWDVPKTPNGKVVSYLIHLLGNPMSTVDREM----WGPKIRRID 500

Mouse   544 NETH-FLFFGLYPGTTYSFTIRASTA-KGFGPPATNQFTTKISAPSMPAYEFETPLNQTDNTVTV 606
            ...| .|:..:.|.|.|:.|:.|.|. |..|.|||......:|.|........:.:|.....|..
  Fly   501 EPHHKTLYESVSPNTNYTVTVSAITRHKKNGEPATGSCLMPVSTPDAIGRTMWSKVNLDSKYVLK 565

Mouse   607 MLKPAQS-RGAPVSVYQIVV------EEERPRRTKKTTEILKCYPVPIHFQN--------ASILN 656
            :..|..| |..|:..|::.:      .:|.|...|......:    .:|..|        |.:::
  Fly   566 LYLPKISERNGPICCYRLYLVRINNDNKELPDPEKLNIATYQ----EVHSDNVTRSSAYIAEMIS 626

Mouse   657 SQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPHKSYRIYYQAASRANGETKIDCVRVAT 721
            |:|:....|            :||.|.::.  |..::             |.|.|....|:.   
  Fly   627 SKYFRPEIF------------LGDEKRFSE--NNDII-------------RDNDEICRKCLE--- 661

Mouse   722 KAAIIVTQLTTPYIR------IAPAAGDGQLTGAVTPKPVPEPEKQ--------TDHTVKIAGVI 772
                     .||::|      |.|   .|.|:.:.:..|:.. ||.        |:|.:||    
  Fly   662 ---------GTPFLRKPEIIHIPP---QGSLSNSDSELPILS-EKDNLIKGANLTEHALKI---- 709

Mouse   773 AGILLFVIIFLGVVLVMKKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCD-EAFSFMGT 836
                      |...|..|:..:.......:|:....:.:..:|.|....|...|.: ..|..:..
  Fly   710 ----------LESKLRDKRNAVTSDENPILSAVNPNVPLHDSSRDVFDGEIDINSNYTGFLEIIV 764

Mouse   837 HNLNGRSVSSPSSFTMKTNTLST----SVPN-SYYPDPFVPT-AIL-----------------DE 878
            .:.|...::....|.:.|.....    |:.| .||....|.. |:|                 .:
  Fly   765 RDRNNALMAYSKYFDIITPATEAEPIQSLNNMDYYLSIGVKAGAVLLGVILVFIVLWVFHHKKTK 829

Mouse   879 THTMASDTSSLAQP------------HTYKKREAADVPYQTGQLHPAIRVADLLQHITQMKCAEG 931
            ......||.:|...            |::.........:..|.:|.    .||............
  Fly   830 NELQGEDTLTLRDSLSRALFGRRNHNHSHFITSGNHKGFDAGPIHR----LDLENAYKNRHKDTD 890

Mouse   932 YGFKEEYESF---FEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQMLEGDNNSDYINGNYI 993
            |||..|||..   |..::......|  ||..||||.:|.|||.:||:|.::.|...:||||.|::
  Fly   891 YGFLREYEMLPNRFSDRTTKNSDLK--ENACKNRYPDIKAYDQTRVKLAVINGLQTTDYINANFV 953

Mouse   994 DGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD---DTEIYKD 1055
            .||.....:|..||||:.||.|||||:|.::...|:|:|||.|..:.||.||||:   ||:.:.|
  Fly   954 IGYKERKKFICAQGPMESTIDDFWRMIWEQHLEIIVMLTNLEEYNKAKCAKYWPEKVFDTKQFGD 1018

Mouse  1056 IKVTLIDTELLAEYVIRTFAVEKRGIH-----EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVK 1115
            |.|.........:|:.||..|.|...:     :.|:|.|:|:..|.|...|.|..|::.|:||:.
  Fly  1019 ILVKFAQERKTGDYIERTLNVSKNKANVGEEEDRRQITQYHYLTWKDFMAPEHPHGIIKFIRQIN 1083

Mouse  1116 SKSPPNAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVF 1180
            |......||::||||||.||||..:.:|.::...|.|..|.|||.|.:||.:|..:||:.:||:|
  Fly  1084 SVYSLQRGPILVHCSAGVGRTGTLVALDSLIQQLEEEDSVSIYNTVCDLRHQRNFLVQSLKQYIF 1148

Mouse  1181 IHDAILEACLCGDTSI----PASQVRSLYYDMNKLDPQTNSSQIKEEFRTLNMVTPTLRVEDCSI 1241
            ::.|:|:....|:|.|    .||.:.||     |..|.....:::.||..| :.|.....:.||:
  Fly  1149 LYRALLDTGTFGNTDICIDTMASAIESL-----KRKPNEGKCKLEVEFEKL-LATADEISKSCSV 1207

Mouse  1242 ALLPRNHEKNRCMDILPPDRCLPFLITID-GESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDF 1305
            .....|:.|||..:|:|.||....|..:. .|:|.||||:.::.|.....||:.|.||.||:.||
  Fly  1208 GENEENNMKNRSQEIIPYDRNRVILTPLPMRENSTYINASFIEGYDNSETFIIAQDPLENTIGDF 1272

Mouse  1306 WRLVLDYHCTSVVMLNDV-DPAQLCPQYWPENGVHRHGPIQVEFVSADLEEDIISRIFRIYNASR 1369
            ||::.:...|::||:::: |..:.||:||.::.| ::..|.|::|.::.......|.|.:.|.. 
  Fly  1273 WRMISEQSVTTLVMISEIGDGPRKCPRYWADDEV-QYDHILVKYVHSESCPYYTRREFYVTNCK- 1335

Mouse  1370 PQDGHRMVQQFQFLGWP-MYRDTPVSKRSFLKLIRQV-DKWQEEYNGG-EGRTVVHCLNGGGRSG 1431
             .|....|.|||:.||| :..:.|...|..::|:.|. :.::...|.| .....|||..|..||.
  Fly  1336 -IDDTLKVTQFQYNGWPTVDGEVPEVCRGIIELVDQAYNHYKNNKNSGCRSPLTVHCSLGTDRSS 1399

Mouse  1432 TFCAISIVCEMLRHQRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEY 1482
            .|.|:.|:.:.||.::.||:....:.||:.:..:::...||:|.:...:.|
  Fly  1400 IFVAMCILVQHLRLEKCVDICATTRKLRSQRTGLINSYAQYEFLHRAIINY 1450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprmNP_001344554.1 MAM 22..182 CDD:214533
ig 192..274 CDD:278476 25/135 (19%)
FN3 282..361 CDD:214495 20/90 (22%)
FN3 383..467 CDD:214495 18/88 (20%)
fn3 499..574 CDD:306538 18/78 (23%)
PTPc 933..1187 CDD:214550 105/264 (40%)
PTPc 1249..1481 CDD:238006 73/236 (31%)
Ptp69DNP_524048.2 IG_like 139..233 CDD:214653 20/94 (21%)
Ig 150..221 CDD:143165 13/71 (18%)
fn3 237..321 CDD:278470 21/98 (21%)
FN3 339..432 CDD:238020 23/115 (20%)
FN3 439..535 CDD:238020 19/99 (19%)
PTPc 892..1155 CDD:214550 105/264 (40%)
PTPc 920..1155 CDD:238006 96/234 (41%)
PHA02694 <1121..1206 CDD:177476 28/90 (31%)
PTPc 1186..1449 CDD:214550 80/266 (30%)
PTPc 1216..1449 CDD:238006 73/235 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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