DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprm and Lar

DIOPT Version :9

Sequence 1:NP_001344554.1 Gene:Ptprm / 19274 MGIID:102694 Length:1486 Species:Mus musculus
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:1756 Identity:486/1756 - (27%)
Similarity:713/1756 - (40%) Gaps:478/1756 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse    50 QVNTLTKPT-----SDPWMPSG-----SFMLVNTSGKPEGQ-RAHLL----LPQLKENDTHCIDF 99
            ||.||:..|     ..|..|:|     .......|.:||.. .:.::    |..:.|...|.|  
  Fly   429 QVRTLSSSTMVITWEPPETPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAI-- 491

Mouse   100 HYFVSSKSNAAPGLLNVYVKVNNGPLGNPI-----WNISGDP-----------------TRTWHR 142
             |.|.         :..|..:..||:..|:     ..:...|                 |:..|.
  Fly   492 -YTVR---------VQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHS 546

Mouse   143 AELAI--STFWPNFYQVIFEVVTSGHQGYLAIDEVKVL-------------------GHPCTRTP 186
            :|..:  ..:|.:.|      ....|...::..|...|                   |...|..|
  Fly   547 SENIVHYELYWNDTY------ANQAHHKRISNSEAYTLDGLYPDTLYYIWLAARSQRGEGATTPP 605

Mouse   187 HFLRI-------QNVEVNAGQFATFQCSAI--------GRTVAGDRLWLQ-GIDVRDAPLKEIKV 235
            ..:|.       :|:...|....|...|.:        ||.:.....::: |.:..:|....:.:
  Fly   606 IPVRTKQYGAPPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNM 670

Mouse   236 TSSRRFIASFNVVNTTKRDAGKYRCMIC--TEGGVGISNYAELVVKEPPVPIAPPQLASVGATYL 298
            ||.        |::..||.. :|:..:.  |..|.|..::..::..:..|| ..||  .|.||.|
  Fly   671 TSI--------VLDELKRWT-EYKIWVLAGTSVGDGPRSHPIILRTQEDVP-GDPQ--DVKATPL 723

Mouse   299 --------W---IQLNANSINGDGPIVAREVEYCTASGSWNDR---QPVDSTSYKIGHLDPDTEY 349
                    |   ::.:.|.|.....|.|:|:. ....|..|:.   ..||:..:.:..|.|||:|
  Fly   724 NSTSIHVSWKPPLEKDRNGIIRGYHIHAQELR-DEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKY 787

Mouse   350 EISV-LLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQ----ITIRWE-PF----- 403
            .|.| .|||.|:|...:   |:..:|....|:|....|:::|   |:    |.:.|| |.     
  Fly   788 SIQVAALTRKGDGDRSA---AIVVKTPGGVPVRPTVSLKIME---REPIVSIELEWERPAQTYGE 846

Mouse   404 --GY---------------------------NVTRCHSYNLTVHYGYQVG-GQEQVR----EE-- 432
              ||                           |:.|...|...|.....:| |||.|:    .|  
  Fly   847 LRGYRLRWGVKDQALKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGT 911

Mouse   433 -------------------VSWD-TDNSHPQHTIT------------NLSPYTNVSV-KLILMNP 464
                               |:|| ....|....||            .|....|::: |.:..|.
  Fly   912 PGGPPSNITIRFQTPDVLCVTWDPPTREHRNGIITRYDVQFHKKIDHGLGSERNMTLRKAVFTNL 976

Mouse   465 EGRKE----------------SQELTVQTDEDLPGAVPTESIQGSAFEEKIFLQWREPTQTYGVI 513
            |...|                |.:|.|:|:.|: |..|. |:|..|..|:....|.||..:.|.:
  Fly   977 EENTEYIFRVRAYTKQGAGPFSDKLIVETERDM-GRAPM-SLQAEATSEQTAEIWWEPVTSRGKL 1039

Mouse   514 TLYEITY--KAVSSFD----------PEIDL-----------------SNQSGRVSKLGN----- 544
            ..|:|.|  .||...|          ...||                 .|..||:|:...     
  Fly  1040 LGYKIFYTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKP 1104

Mouse   545 ------------ETHFLFFG--------------------------------------------- 552
                        .||.:...                                             
  Fly  1105 EDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYV 1169

Mouse   553 -------LYPGTTYSFTIRASTAK-GFGPPATNQFTTKISAPS-MPAYEFETPLNQTDNTVTVML 608
                   |.|.|||:..:.|..:. .:.||.....||:::||. |...:|...:|..:  :.|:|
  Fly  1170 KTHTINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQPMVKPDFYGVVNGEE--ILVIL 1232

Mouse   609 KPAQSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASILNSQY--------YFAAEF 665
            ..|.....|:|.|.:||..|......|         :|..|....:|..:.        |.||:|
  Fly  1233 PQASEEYGPISHYYLVVVPEDKSNLHK---------IPDQFLTDDLLPGRNKPERPNAPYIAAKF 1288

Mouse   666 PADSLQAAQPFT--IGDNKTYNGYWNTPLLPHKSYRIYYQAASRANGETKIDCVRVATKAAIIVT 728
            |..|:    |||  :|....|:.:.|..|...|.|||:.:|.             |.|....:.|
  Fly  1289 PQRSI----PFTFHLGSGDDYHNFTNRKLEREKRYRIFVRAV-------------VDTPQKHLYT 1336

Mouse   729 QLTTPY-------IRIAPAAGDGQLTGAVTPKPVPEPEKQTDHT---VKIAGVIAGILLFVIIF- 782
              ::|:       :|.||   .|:......|....|||...:..   .:|..|:..:::...|. 
  Fly  1337 --SSPFSEFLSLDMREAP---PGERPHRPDPNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVS 1396

Mouse   783 --LGVVLVMKKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCDEAFSFMGTHNLNGRSVS 845
              |.|:.|:|:|:...|..:..:.||..|.          |:.|..                  .
  Fly  1397 TALIVLCVVKRRRQPCKTPDQAAVTRPLMA----------ADLGAG------------------P 1433

Mouse   846 SPSSFTMKTNTLSTSVPNSYYPDPFVPTAILDETHTMASDTSSLAQPHTYKKREAADVPYQTGQL 910
            :||                   ||.....:..:|..|.|                          
  Fly  1434 TPS-------------------DPVDMRRLNFQTPGMIS-------------------------- 1453

Mouse   911 HPAIRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVR 975
            ||.|.:::...||.::|..:...|.:||||...||...||::..:.|:.||||.|:.|||||||:
  Fly  1454 HPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQ 1518

Mouse   976 LQMLEGDNNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRV 1040
            |..:||...|||||.||.|||.:.|.|:|||||:|||..|||||.|...||:|:|:|.|.|..|:
  Fly  1519 LPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRI 1583

Mouse  1041 KCCKYWPD-DTEIYKDIKVTLIDTELLAEYVIRTFAVEKRGIHEIREIRQFHFTGWPDHGVPYHA 1104
            ||.:|||. .||.|..|.||:.:|:.||.|.||||.:.::|.::.|||:|..||.|||||||.|.
  Fly  1584 KCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHP 1648

Mouse  1105 TGLLGFVRQVKSKSPPNAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRV 1169
            ...|.|:|:.::.:||.:||::||||||.|||||:||||.||:..:.|.::|||..|..||::|.
  Fly  1649 APFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRN 1713

Mouse  1170 NMVQTEEQYVFIHDAILEACLCGDTSIPASQVRSLYYDMNKL---DPQTNSSQIKEEFRTLNMVT 1231
            .|||||:||:|||||||||.:||.|.:||   |:|:..:.||   :|....|.::.||:.|:.|.
  Fly  1714 YMVQTEDQYIFIHDAILEAIICGVTEVPA---RNLHTHLQKLLITEPGETISGMEVEFKKLSNVK 1775

Mouse  1232 PTLRVEDCS---IALLPRNHEKNRCMDILPPDRCLPFLITIDG-ESSNYINAALMDSYKQPSAFI 1292
                 .|.|   .|.||.|..|||.:.|||.:....:|..|.| |.|:|:||:.:|.|:..||:|
  Fly  1776 -----MDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYRSAYI 1835

Mouse  1293 VTQHPLPNTVKDFWRLVLDYHCTSVVMLNDVDP--AQLCPQYWPENGVHRHGPIQVEFVSADLEE 1355
            ..|.|:.:..:||||::.:::.|.||||..:..  .:.|.||||.....|:   |...|....|.
  Fly  1836 AAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRY---QYYVVDPIAEY 1897

Mouse  1356 DIISRIFRIYNASRPQDG-HRMVQQFQFLGWPMYRDTPVSKRSFLKLIRQVDKWQEEYNGGEGRT 1419
            ::.....|.:..:..:|| .|.|:||||:.|| .:..|.|...|:..|.||.|.:|:: |.:|..
  Fly  1898 NMPQYKLREFKVTDARDGSSRTVRQFQFIDWP-EQGVPKSGEGFIDFIGQVHKTKEQF-GQDGPI 1960

Mouse  1420 VVHCLNGGGRSGTFCAISIVCEMLRHQRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYLN 1484
            .|||..|.||||.|..:|||.|.::::..:|||..|:.||:.:|.||...|||.|||..|||||.
  Fly  1961 TVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAALEYLG 2025

Mouse  1485 S 1485
            |
  Fly  2026 S 2026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprmNP_001344554.1 MAM 22..182 CDD:214533 31/189 (16%)
ig 192..274 CDD:278476 17/92 (18%)
FN3 282..361 CDD:214495 29/93 (31%)
FN3 383..467 CDD:214495 30/162 (19%)
fn3 499..574 CDD:306538 24/173 (14%)
PTPc 933..1187 CDD:214550 138/254 (54%)
PTPc 1249..1481 CDD:238006 89/235 (38%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020 21/96 (22%)
FN3 520..610 CDD:238020 12/95 (13%)
FN3 616..707 CDD:238020 17/99 (17%)
FN3 712..810 CDD:238020 30/104 (29%)
FN3 832..907 CDD:238020 15/74 (20%)
FN3 914..1005 CDD:238020 15/90 (17%)
FN3 1012..1101 CDD:238020 21/89 (24%)
fn3 1106..1198 CDD:278470 8/91 (9%)
PTPc 1476..1731 CDD:214550 138/254 (54%)
PTPc 1503..1731 CDD:238006 128/227 (56%)
PTPc 1763..2022 CDD:214550 99/268 (37%)
PTPc 1791..2022 CDD:238006 89/235 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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