DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprj and Lar

DIOPT Version :9

Sequence 1:XP_006499054.1 Gene:Ptprj / 19271 MGIID:104574 Length:1351 Species:Mus musculus
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:1605 Identity:337/1605 - (20%)
Similarity:537/1605 - (33%) Gaps:580/1605 - (36%)


- Green bases have known domain annotations that are detailed below.


Mouse   160 AVVSPTSVLLTWKHNDSGASECRIENKME--SNLTFPVKNQTSCNITGLSPGTSYTFSIISVTTN 222
            ||.||...:...|    |:.:...||:|.  .|:...:..|.|.|.|.::..|......:||...
  Fly   258 AVGSPMPHVKWMK----GSEDLTPENEMPIGRNVLQLINIQESANYTCIAASTLGQIDSVSVVKV 318

Mouse   223 ETLNKTITTEPWPVSDLHVTSVGVTQARLTWSNANGTASYRMLIEELTTHSSVNISGLKPGTNNS 287
            ::|       |...:|:.::.|..|..||.||....        |:|..:    :...||...|.
  Fly   319 QSL-------PTAPTDVQISEVTATSVRLEWSYKGP--------EDLQYY----VIQYKPKNANQ 364

Mouse   288 FAFPE--------------SNETQADFAVAEEVPADANGTKRIPVTNLSQLHKNSLVSVDPPSGQ 338
             ||.|              |..|:.:|.|             |.|.|:.:         .|||. 
  Fly   365 -AFSEISGIITMYYVVRALSPYTEYEFYV-------------IAVNNIGR---------GPPSA- 405

Mouse   339 DPSLTEILLTDLKPDTQYNATIYSQAANGT--EGQPRNKVFKTNSTQVSDVRAMNISASSMTLTW 401
                         |.|   .|....:..||  |..|||            |:...:|:|:|.:||
  Fly   406 -------------PAT---CTTGDFSFGGTKMESAPRN------------VQVRTLSSSTMVITW 442

Mouse   402 K--SNYDGSRTSIVYKIHVAGGTHSV-----NQTVNKTE-AIILGLSSSTLYNITVHPFLGQTEG 458
            :  ...:|..|.  ||::....::..     :|.|:.:| ..:..|:...:|.:.|..:.....|
  Fly   443 EPPETPNGQVTG--YKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAG 505

Mouse   459 ---TPGFLQVYTS---PDQVSDFRVTNVSTRAIGLAW-----RSNDSKSFEIFIKQD-GGEKHRN 511
               ||  :||...   |.|.|:||.|::...|:.|.|     .|.:...:|::.... ..:.|..
  Fly   506 PMSTP--VQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYELYWNDTYANQAHHK 568

Mouse   512 ASTGNQSYMVEDLKPGTSYHFEIIPRGPDGTEGLSSTVNGSTDP----------SAVTDIRVVNI 566
            ..:.:::|.::.|.|.|.|:..:..|...|        .|:|.|          :...:|..:..
  Fly   569 RISNSEAYTLDGLYPDTLYYIWLAARSQRG--------EGATTPPIPVRTKQYGAPPRNITAIAT 625

Mouse   567 STTEMQLEW-----------------------QNTDDASGYTYH---LVLESKSGSIIRTNSSQK 605
            |:|.:.|.|                       :..|:|:..|.:   :||:    .:.|....:.
  Fly   626 SSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSIVLD----ELKRWTEYKI 686

Mouse   606 WITVG-SLTPGTLYNVTIFPEVDQIQGISNSITQYTRPSSVSHIEVNTTTTTAAIRWK---NEDA 666
            |:..| |:..|...:..|....:.:.|         .|..|....:|  :|:..:.||   .:|.
  Fly   687 WVLAGTSVGDGPRSHPIILRTQEDVPG---------DPQDVKATPLN--STSIHVSWKPPLEKDR 740

Mouse   667 ASASYAYSVLILKTGDGSNVTSNFTKDP---------SILIPELIPGVSYTVKI--LTQVGDGTT 720
            ......|.:...:..|..   ..|..:|         ...:..|.|...|::::  ||:.|||..
  Fly   741 NGIIRGYHIHAQELRDEG---KGFLNEPFKFDVVDTLEFNVTGLQPDTKYSIQVAALTRKGDGDR 802

Mouse   721 SL-----VPGWNLFCTEPEPVTSFHCEVVPKEP--ALVLKWACP---FGMYTGFEL--GVRSD-- 771
            |.     .||.    ....|..|.  :::.:||  ::.|:|..|   :|...|:.|  ||:..  
  Fly   803 SAAIVVKTPGG----VPVRPTVSL--KIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKDQAL 861

Mouse   772 -----SWDNMT--RLENCTSDDDTECRTEVAYLNFSTSYNISIATLSC-------GKMALPAQNI 822
                 |...||  |.:|.....:.|.|.       :.|.:|.|...:.       |....|..||
  Fly   862 KEEMLSGPQMTKKRFDNLERGVEYEFRV-------AGSNHIGIGQETVKIFQTPEGTPGGPPSNI 919

Mouse   823 ----------CTTGITDPPTPDGSPNITS----VSHNSV-------------KVKFSGFEASHG- 859
                      |.|  .||||.:....|.:    ..|..:             |..|:..|.:.. 
  Fly   920 TIRFQTPDVLCVT--WDPPTREHRNGIITRYDVQFHKKIDHGLGSERNMTLRKAVFTNLEENTEY 982

Mouse   860 --PIKAYAVILTTGEAAQPSAD-VLKYTYEDFKRGAS---------------------------- 893
              .::||     |.:.|.|.:| ::..|..|..|...                            
  Fly   983 IFRVRAY-----TKQGAGPFSDKLIVETERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGY 1042

Mouse   894 ------------DTYVTYLIRIEEKGQSQGLSEVLNYEI-------------------------- 920
                        |.:.|..:.:.|......|.:...|.:                          
  Fly  1043 KIFYTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDV 1107

Mouse   921 -------DVGNQSTTLGY----------YN----------------------------------- 933
                   ||...|.||.:          |.                                   
  Fly  1108 PLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTH 1172

Mouse   934 --GRLEPLGSYRACVAGF---------TNITYNLQND-----------GLINGDE---------- 966
              ..|.|..:|...|:..         |.||...|..           |::||:|          
  Fly  1173 TINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASE 1237

Mouse   967 ----------------------------------------------------------------- 966
                                                                             
  Fly  1238 EYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSG 1302

Mouse   967 -SYVSF-----------------------------SPYSEAVFL------------------PQD 983
             .|.:|                             ||:||.:.|                  |.:
  Fly  1303 DDYHNFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAE 1367

Mouse   984 PGV----------ICGAVFGCIFGALAI-TAVGGFIFWRKKRTDAK------------------- 1018
            |.|          |...|...:.....: ||:......:::|...|                   
  Fly  1368 PEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAG 1432

Mouse  1019 ---NNEVSFSQIKPKKSKLIR-----VENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYTAE 1075
               ::.|...::..:...:|.     :..|..:.::.:::.|..|::|||.:: .|.......:.
  Fly  1433 PTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIE-PGQQFTWDNSN 1496

Mouse  1076 IAENRGKNRYNNVLPYDISRVKL-SVQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWR 1139
            :..|:.||||.||..||.|||:| :|:.....|||||||..||.....::||||||..|..||||
  Fly  1497 LEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWR 1561

Mouse  1140 MVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQNS 1204
            |.||.....|||:|:..|:.|.||::|||::..:.||.|.|.:|....|..::||.|.:.....:
  Fly  1562 MCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQGFN 1626

Mouse  1205 ESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPES-PILVHCSAGVGRTGTFIAIDR 1268
            :...::|..||:||||||||.....:.|   :|......|||| |::|||||||||||.:|.||.
  Fly  1627 DRREIKQLQFTAWPDHGVPDHPAPFLQF---LRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDS 1688

Mouse  1269 LIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDII 1313
            ::.::::|..:|:||.|..||..|..||||||||:|::..:|:.|
  Fly  1689 MLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAI 1733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprjXP_006499054.1 fn3 162..222 CDD:365830 15/61 (25%)
fn3 383..460 CDD:365830 17/87 (20%)
FN3 469..553 CDD:238020 20/89 (22%)
FN3 555..622 CDD:214495 16/103 (16%)
FN3 642..721 CDD:238020 19/92 (21%)
PTP_tm 831..1014 CDD:376280 53/477 (11%)
R-PTPc-J 1083..1311 CDD:350463 104/229 (45%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352 17/63 (27%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 17/62 (27%)
fn3 324..404 CDD:278470 23/114 (20%)
FN3 423..514 CDD:238020 23/106 (22%)
FN3 520..610 CDD:238020 22/97 (23%)
FN3 616..707 CDD:238020 16/94 (17%)
FN3 712..810 CDD:238020 21/111 (19%)
FN3 832..907 CDD:238020 18/81 (22%)
FN3 914..1005 CDD:238020 20/97 (21%)
FN3 1012..1101 CDD:238020 5/88 (6%)
fn3 1106..1198 CDD:278470 10/91 (11%)
PTPc 1476..1731 CDD:214550 111/258 (43%)
PTPc 1503..1731 CDD:238006 105/230 (46%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

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