DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprj and Ptp4E

DIOPT Version :9

Sequence 1:XP_006499054.1 Gene:Ptprj / 19271 MGIID:104574 Length:1351 Species:Mus musculus
Sequence 2:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:1597 Identity:390/1597 - (24%)
Similarity:624/1597 - (39%) Gaps:411/1597 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse    30 PPREAPASLRPRPLRARRARLRRVAAAAAAAMSPGKPGAGGAGTRRTGWRRR------------- 81
            ||......||               ::.:|.::...||:|    |.:|:|.|             
  Fly   153 PPANLSVQLR---------------SSKSAFITWRPPGSG----RYSGFRIRVLGLTDLPFERSY 198

Mouse    82 ----RRRRRLETETRAPGFGHTAGRVPGTFQGAQGMKPAARETRTPPRSPG--LRWALLPLLLLL 140
                ....:|..:...|| |....:....:||.:.:...:|...|.|.:||  :.|......|| 
  Fly   199 SLEGNETLQLSAKELTPG-GSYQVQAYSVYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLL- 261

Mouse   141 RQGQVLCAGAAPNPIFDIEAV-VSPTSVLLTWKHNDSGASECRIENKMESNLTFPVKNQTSCNIT 204
                ||.....|..|:....| ::|         :|:..|...:|.:.|.    |...|.:  ..
  Fly   262 ----VLWQPPFPAGIYTHYRVSITP---------DDAIQSVLYVEREGEP----PGPAQAA--FK 307

Mouse   205 GLSPGTSYTFSIISVTTNETLNKTITTEPWPVSDLHVTSVGVTQARLTWSNANGTASYRMLIEEL 269
            ||.||..|..|:.:|:.:||.:...|.....|.: .|.:|...:|..|      ::|:|:..|..
  Fly   308 GLVPGREYNISVQTVSEDETSSVPTTARYLTVPE-RVLNVTFDEAYTT------SSSFRVRWEPP 365

Mouse   270 TTHSS--------------VNISGLKPGTNNSFAFPESNETQADFAVAEEVPAD------ANGTK 314
            .|:|.              .|:.....|.:..|.:|:..|....:.|..:..||      |:|..
  Fly   366 RTYSEFDAYQVMLSTSRRIFNVPRAANGDSVYFDYPDILEPGRTYEVVVKTIADNVNSWPASGEV 430

Mouse   315 RI---PVTNLSQL---HKNSL-VSVDP-PSGQDPS-----------------------------L 342
            .:   ||.:|...   ..|:| :|.:| .:|:..|                             |
  Fly   431 TLRPRPVRSLGGFLDDRSNALHISWEPAETGRQDSYRISYHEQTNASEVPAPFPVAAESQITTNL 495

Mouse   343 TEILLTDLKPDTQYNATIYSQAANGTEGQPRNKVFKTNSTQ-----VSDVRAMNISASSMTLTWK 402
            ||..|..|....:|  .|..||.  ::|...|....|..|:     :.::|:::   ..:.|:|:
  Fly   496 TEYTLDSLLAGRRY--LIAVQAL--SKGVASNASDITRYTRPAAPLIQELRSID---QGLMLSWR 553

Mouse   403 SNYDGSRTSIVYKIHVA--GGTHSVNQTVNKTEAIILGLSSSTLYNITVHPFLGQTEGTPG--FL 463
            |:.:..:..  |::|..  |.........|:|...|..|...:.|.:.||.........|.  |.
  Fly   554 SDVNSRQDR--YEVHYQRNGTREERTMATNETSLTIHYLHPGSGYEVKVHAISHGVRSEPHSYFQ 616

Mouse   464 QVYTSPDQVSDFRVTNVSTRAIGLAWRSNDSKSFEIFI---KQDGGEKHRNASTGNQSYMVEDLK 525
            .|:..|.|  :..:..|.|..:.|.|::.:...|..::   :.|.....|.:........::|:.
  Fly   617 AVFPKPPQ--NLTLQTVHTNLVVLHWQAPEGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMH 679

Mouse   526 PGTSYHFEI--IPRGPDGTEGLSSTVNGSTDPSAVTDIRVVNISTTEMQLEWQN----------- 577
            .|..|..::  :..|.:....|.  :|.:..|..|::: |..:.:..:.|||..           
  Fly   680 YGERYLVQVNTVSFGVESPHPLE--LNVTMPPQPVSNV-VPLVDSRNLTLEWPRPDGHVDFYTLK 741

Mouse   578 ---TDDASGYTYHLV--LESKSGSIIRTNSSQKWITVGSLTPGTLYNVTIFPEVDQIQGISNSIT 637
               ||:.....:..|  ||..|...:|       |.:..|:||..|..       ::|..||.|.
  Fly   742 WWPTDEEDRVEFKNVTQLEDLSSPSVR-------IPIEDLSPGRQYRF-------EVQASSNGIR 792

Mouse   638 QYTRPSSVSHIEVNTTTTTAAIRWKNEDAASASYAYSVLILKTGDGSNVTSNFTK---------- 692
                 |..:|:    :|.|..:...:...|:|.:       :.|....:|.::|.          
  Fly   793 -----SGTTHL----STRTMPLIQSDVFIANAGH-------EQGQDETITLSYTPTPADSTRFDI 841

Mouse   693 ------DPSILIPE--------------LIPGVSYTVKILTQVGDGTTSLVPGWNLFCTEPEPVT 737
                  ||:|...|              |.||..|.|.:.| |..|..|| |...|:...|.|::
  Fly   842 YRFSMGDPTIKDKEKLANDTERKLSFSGLTPGKLYNVTVWT-VSGGVASL-PVQRLYRLHPLPIS 904

Mouse   738 SFHC-EVVPKEPALVLKWACPFGMYTGFELGVRSDSWDNMTRLENCTSDDDTECRTEVAYLNFS- 800
            .... :|..:|  :.|.|..|.|.||.|||...|...:....|:|.|.:.:...:....|.|:: 
  Fly   905 DLKAIQVAARE--ITLHWTAPAGEYTDFELQYLSADEEAPQLLQNVTKNTEITLQGLRPYHNYTF 967

Mouse   801 -----------TSY-NISIATL------------------------------------------- 810
                       |.: ::|::||                                           
  Fly   968 TVVVRSGSIQGTDFADVSVSTLMRSSAPISASYQTLTAPPGKVDYFQPSDVQPGEVTFEWSLEPA 1032

Mouse   811 -----------SC-------------------------------------GKMAL----PAQNIC 823
                       :|                                     .|.||    ..::|.
  Fly  1033 EQHGPIDYFRITCQNADDAADVSSYEFPVNATQGKIDGLVPGNHYIFRIQAKSALGYGAEREHIQ 1097

Mouse   824 TTGITDPPTPDGSPNITSVSHNSVKVKFS----GFEASHGPIKAYAVILT--TGEAA----QPS- 877
            |..|..||.|:.|.....||..|..::.|    .|..:||.:::|.:|:.  .|:.|    .|| 
  Fly  1098 TMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNASGLEMPSW 1162

Mouse   878 ADVLKYT----YEDFKRGASDTYVTYLIRIEEKGQSQGLSEVLNYEIDVGN-QSTTLGYYNGRLE 937
            .||..||    |:     |.:.|..:|   ...|..:...|..::.|...| .....||.||.|.
  Fly  1163 QDVQAYTVWLPYQ-----AIEPYNPFL---TSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLR 1219

Mouse   938 PLGSYRACVAGFTNITYNLQNDGLINGDESYVSFSPYSEAVFLPQDPGVICGAVFGCIFGALAIT 1002
            ...:||..:..||              ||...:.:.||..:...:...||..|.    ..|:.:.
  Fly  1220 AGTTYRIKIRAFT--------------DEDKFTDTVYSSPITTERSDTVIVAAT----VSAVLLV 1266

Mouse  1003 AVGGFIFWRKKRTDAKNNEVSFSQIKPKKSKL----------IRVENFEAYFKKQQADSNCGFAE 1057
            |:...:.:.:.|..........::::.:.:.|          :.|::|..:::...|||:..|:|
  Fly  1267 AMVLVVVYCQHRCQLIRRASKLARMQDELAALPEGYITPNRPVHVKDFSEHYRIMSADSDFRFSE 1331

Mouse  1058 EYEDLKLIGISLPKYTAEIAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKK 1121
            |:|:||.:|.......|.:..||.|||:.|:||||.||.||. |......||||||||||::|.:
  Fly  1332 EFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPR 1396

Mouse  1122 DFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWP-SKQAQDYGDITVAMTSE 1185
            :||.|||||.:|.::||||.||.|..||||||:|.|:||.||::||| .:.|..||||.|.:..:
  Fly  1397 EFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIID 1461

Mouse  1186 VVLPEWTIRDFVVKNMQNSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPE-SPI 1249
            ....:|:|.:|:|.  :|.||..:|.||||:|||.|||:....|:.|   ||.:...|..: .||
  Fly  1462 THYHDWSISEFMVS--RNCESRIMRHFHFTTWPDFGVPEPPQSLVRF---VRAFRDVIGTDMRPI 1521

Mouse  1250 LVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIR 1314
            :|||||||||:|||||:||::..|...:.||::|||:.:|..|..|||||.|||.::||:|.::.
  Fly  1522 IVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLAVLE 1586

Mouse  1315 AQKDSKVDLI-------YQNTTAMTIYENLEPVSMFG 1344
            .::....|.:       |:.|   .||...:|.:..|
  Fly  1587 GKEHLLADSLELHANDGYEVT---KIYLERQPQTKMG 1620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprjXP_006499054.1 fn3 162..222 CDD:365830 14/59 (24%)
fn3 383..460 CDD:365830 14/83 (17%)
FN3 469..553 CDD:238020 15/88 (17%)
FN3 555..622 CDD:214495 18/82 (22%)
FN3 642..721 CDD:238020 21/108 (19%)
PTP_tm 831..1014 CDD:376280 46/198 (23%)
R-PTPc-J 1083..1311 CDD:350463 118/230 (51%)
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 19/108 (18%)
fn3 247..328 CDD:278470 25/100 (25%)
fn3 343..417 CDD:278470 15/79 (19%)
fn3 443..525 CDD:278470 17/85 (20%)
FN3 548..611 CDD:238020 13/64 (20%)
FN3 620..706 CDD:238020 15/89 (17%)
fn3 708..796 CDD:278470 23/107 (21%)
fn3 824..886 CDD:278470 13/62 (21%)
fn3 902..978 CDD:278470 18/77 (23%)
fn3 1013..1092 CDD:278470 4/78 (5%)
UP_III_II 1106..>1248 CDD:297589 40/163 (25%)
PTPc 1329..1582 CDD:214550 129/257 (50%)
PTPc 1355..1582 CDD:238006 119/231 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 284 1.000 Domainoid score I1616
eggNOG 1 0.900 - - E2759_KOG0791
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19134
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.910

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