DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAMP5 and Scamp5

DIOPT Version :10

Sequence 1:XP_047288174.1 Gene:SCAMP5 / 192683 HGNCID:30386 Length:273 Species:Homo sapiens
Sequence 2:NP_113914.2 Gene:Scamp5 / 65171 RGDID:68356 Length:235 Species:Rattus norvegicus


Alignment Length:235 Identity:232/235 - (98%)
Similarity:235/235 - (100%) Gaps:0/235 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    39 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGG 103
            |||||||||||||||||||||||||||||||||:|:|||||||||||||||||||||||||||||
  Rat     1 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGG 65

Human   104 GGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWG 168
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat    66 GGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWG 130

Human   169 VCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAW 233
            ||||||||||||||||||||||||||||||:||||||||||||||||||||||||||||||||||
  Rat   131 VCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAW 195

Human   234 KNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM 273
            ||||||||||||||||||||||||||||||||||||||||
  Rat   196 KNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCAMP5XP_047288174.1 SCAMP 44..217 CDD:461193 169/172 (98%)
Scamp5NP_113914.2 SCAMP 6..179 CDD:461193 169/172 (98%)

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