DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptprf and Ptp10D

DIOPT Version :9

Sequence 1:XP_006502927.1 Gene:Ptprf / 19268 MGIID:102695 Length:1924 Species:Mus musculus
Sequence 2:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster


Alignment Length:1697 Identity:400/1697 - (23%)
Similarity:628/1697 - (37%) Gaps:515/1697 - (30%)


- Green bases have known domain annotations that are detailed below.


Mouse   237 APRFSIPP-----SSQEV---------MPGGSVNLTCVAVGAPMPYVKWMMGAEELTKEDEMP-- 285
            :|.|..|.     :|:|:         :||...|.......  ..:..|:.....:|...:.|  
  Fly    66 SPPFGYPEPNTTIASREIGDEIQFSRALPGTKYNFWLYYTN--FTHHDWLTWTVTITTAPDPPSN 128

Mouse   286 ------VGRNVLELSNVMRSANYTCVAISSLGMIEA-------------TAQVTVKAL------- 324
                  .|:|.:.|.:.....:||...|..||:.||             |.|.:||.|       
  Fly   129 LSVQVRSGKNAIILWSPPTQGSYTAFKIKVLGLSEASSSYNRTFQVNDNTFQHSVKELTPGATYQ 193

Mouse   325 -----------------------PKPPIDLVVTETTATSVTLTW-------------------DS 347
                                   |..|...:|.....|::.:.|                   |:
  Fly   194 VQAYTIYDGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPYPAGIYTHYKVSIEPPDA 258

Mouse   348 GNT--------EP-----VSFYGI------------------------QYRAAGTDGPFQEV--- 372
            .::        ||     .:|.|:                        |||..    |.:.:   
  Fly   259 NDSVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTV----PLRPLNVT 319

Mouse   373 ---DGVASTRYSI-----GGLSPFSEYAFRVLAVNSIGRGPPSEA------------------VR 411
               |.:.|..:.:     .|:|.|.:|...|.........|.|..                  |.
  Fly   320 FDRDFITSNSFRVLWEAPKGISEFDKYQVSVATTRRQSTVPRSNEPVAFFDFRDIAEPGKTFNVI 384

Mouse   412 ARTGEQAPSSPP-------RRVQARML------SASTMLVQWEPPEEPNGLVRGYRVYYTPDSRR 463
            .:|.....:|.|       |.:..|.|      ..:||::.||  .:|......||:.|      
  Fly   385 VKTVSGKVTSWPATGDVTLRPLPVRNLRSINDDKTNTMIITWE--ADPASTQDEYRIVY------ 441

Mouse   464 PLSAWHK---HNTDAGLLT------TVGSLLPGITYSLRVLAFTA----------VGDGPPSPTI 509
                 |:   .|.|...||      |:.|||||..|||.|.|.:.          |...|.||.|
  Fly   442 -----HELETFNGDTSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFVVTRPSSPII 501

Mouse   510 Q-VKT-QQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVY---WAAEDEGQQHKVTFDP 569
            : :|: :.|                 :.:||......:..:||::|   ..::...|:.|     
  Fly   502 EDLKSIRMG-----------------LNISWKSDVNSKQEQYEVLYSRNGTSDLRTQKTK----- 544

Mouse   570 TSSYTLEDLKPDTLYHFQLAARS-DLGVGVFTPTVEARTAQSTPSA--------PPQKVTCVSTG 625
            .|...:::|:|...|..::.|.| ||              :|.|.|        ||:.:|..:..
  Fly   545 ESRLVIKNLQPGAGYELKVFAVSHDL--------------RSEPHAYFQAVYPNPPRNMTIETVR 595

Mouse   626 STTVRVSWVPPPADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEKWT------ 684
            |.:|.|.|.||    .:|..|:||:.|. .|.|.:...:....|.|....|:...||:|      
  Fly   596 SNSVLVHWSPP----ESGEFTEYSIRYR-TDSEQQWVRLPSVRSTEADITDMTKGEKYTIQVNTV 655

Mouse   685 ----EYRVWVRAHTDVGPGPESSPVLVRTDEDV-------------------PSGPPRKVE---- 722
                |..|....:|.|.|.|.|:.:.:....::                   ||..|.:|:    
  Fly   656 SFGVESPVPQEVNTTVPPNPVSNIIQLVDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNV 720

Mouse   723 -----VEPLNSTAV-------HVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQ-DVMLA 774
                 .:.|::..|       .|.:|..:....:|.:.|....|       ||..|:|| ||::|
  Fly   721 SENKSADDLSTVRVLIGELMPGVQYKFDIQTTSYGILSGITSLY-------PRTMPLIQSDVVVA 778

Mouse   775 EAQWRPEESEDYETTIS---GLTPETTYSITVAAYTTKGDGARSKPKV-------VTTTGAVPGR 829
            ..     |.||...||:   ..||:::....:..::......|.|.|:       ||.||.||||
  Fly   779 NG-----EKEDERDTITLSYTPTPQSSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVPGR 838

Mouse   830 PTMMVSTTAMHTALLQWHPPKELPGELLGYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKGATY 894
               :.:.|.       |    .:.|.:....:|  |.|...|..|           |.||     
  Fly   839 ---LYNITV-------W----TVSGGVASLPIQ--RQDRLYPEPI-----------TQLH----- 871

Mouse   895 VFRLAAKNRAGPGEEFEKEITTPEDVPSGFPQNLRVTGLTTSTTELTWDPPVLAERNGHITNYTV 959
                                               .|.:|.:...|.||.|     .|...::.:
  Fly   872 -----------------------------------ATNITDTEISLRWDLP-----KGEYNDFDI 896

Mouse   960 VYRDINSQLELQNVTNDTHLTLLGLKP--DTTYDIKVRAHTS----KGAGPLSPSIQSRTMPVEQ 1018
            .|...::.| .||:|....:|:..|:|  :.|:.:.||:.|.    :.:.|||.|..:......:
  Fly   897 AYLTADNLL-AQNMTTRNEITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGR 960

Mouse  1019 VFAKNFRVAAAMKTSVLLSWEVPDSYKSAV--PFKILYNG------------QSVEVDGHSMRKL 1069
            |  :.|.......:.:...|.:|.|..:.|  .|.|.|..            :|.|..|     :
  Fly   961 V--ERFHPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFG-----V 1018

Mouse  1070 IADLQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPDLLPQKP----LPASAFIEDG----RFSLSM 1126
            |.:|:|...|.|.:..:.:...|.:.... :|.|.|.|.:|    :|...:....    ||..:.
  Fly  1019 IKNLKPGETYVFKIQAKTAIGFGPEREYR-QTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNY 1082

Mouse  1127 PQVQDPSLVRWFYIVVVPID-RVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLK 1190
            ...|: ..||.:.|:|...| :....|..|.|...:...:....:||:                 
  Fly  1083 FSDQN-GQVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAID----------------- 1129

Mouse  1191 PYVAAQVDVLPDTFTLGDKKSYR---GFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEI 1252
            ||...:...:.| ||:|.:....   |:.|.||....:|:..|.|.    ....::..:.||   
  Fly  1130 PYYPFENRSVED-FTIGTENCDNHKIGYCNGPLKSGTTYRVKVRAF----TGADKFTDTAYS--- 1186

Mouse  1253 VVQVTPAQQQEEPEMLWVTGPVLAVILIILIVIAILLFKRKRTH----SPSSKDEQSIGLKDSLL 1313
                .|.|..::...|.|...|...|:::|:| .:|.:||:|.:    :..|:...::.|.||: 
  Fly  1187 ----FPIQTDQDNTSLIVAITVPLTIILVLLV-TLLFYKRRRNNCRKTTKDSRANDNMSLPDSV- 1245

Mouse  1314 AHSSDPVEMRRLNYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESI-D 1377
                  :|..|                       ||.|.:.|::...:.|:...:||:|:|.: .
  Fly  1246 ------IEQNR-----------------------PILIKNFAEHYRLMSADSDFRFSEEFEELKH 1281

Mouse  1378 PGQQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQG 1442
            .|:......::...|:||||:.|::.|||||..|..:|...|||||||||:.|:.....:|.|||
  Fly  1282 VGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQG 1346

Mouse  1443 PLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTET----YGLIQVTLVDTVELA 1503
            ||..|..|||||.||..:..:||:||..||.|.|||||||   .:|    ||.|:|.:::....|
  Fly  1347 PLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWP---NDTVPVFYGDIKVQILNDSHYA 1408

Mouse  1504 TYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAG 1568
            .:.|..|.|.:  .||:|.||.|.|..|||.|||..|..::.|:|..:.....:..|:|||||||
  Fly  1409 DWVMTEFMLCR--GSEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAG 1471

Mouse  1569 VGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAMCGHTEVL 1633
            |||:|.||.:|.:|:::.....|||:|.|..||.:|.:|||||.||:.||:.|| |.:.|...::
  Fly  1472 VGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLL-AVLEGKENIV 1535

Mouse  1634 --ARNLY 1638
              ||.::
  Fly  1536 GPAREMH 1542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprfXP_006502927.1 I-set 33..124 CDD:369462
Ig2_RPTP_IIa_LAR_like 152..232 CDD:319301
Ig3_RPTP_IIa_LAR_like 252..320 CDD:143216 17/88 (19%)
FN3 325..414 CDD:238020 24/173 (14%)
FN3 421..513 CDD:238020 34/124 (27%)
FN3 518..607 CDD:238020 15/92 (16%)
FN3 615..709 CDD:238020 29/103 (28%)
FN3 716..822 CDD:238020 28/132 (21%)
FN3 827..916 CDD:238020 14/88 (16%)
FN3 925..1013 CDD:238020 23/93 (25%)
FN3 1022..>1081 CDD:238020 15/72 (21%)
PTP_DSP_cys 1352..1627 CDD:391942 119/279 (43%)
R-PTP-F-2 1629..1919 CDD:350477 2/12 (17%)
Ptp10DNP_996413.2 fn3 124..205 CDD:278470 16/80 (20%)
fn3 220..304 CDD:278470 9/83 (11%)
fn3 315..391 CDD:278470 11/75 (15%)
FN3 405..494 CDD:238020 27/101 (27%)
FN3 511..574 CDD:238020 16/81 (20%)
FN3 583..671 CDD:238020 25/92 (27%)
fn3 683..753 CDD:278470 8/69 (12%)
fn3 787..850 CDD:278470 17/76 (22%)
fn3 866..935 CDD:278470 22/125 (18%)
fn3 961..1043 CDD:278470 18/88 (20%)
PTPc 1272..1525 CDD:214550 114/257 (44%)
PTPc 1298..1525 CDD:238006 108/231 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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