DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprb and Ptp4E

DIOPT Version :10

Sequence 1:XP_036011586.1 Gene:Ptprb / 19263 MGIID:97809 Length:2361 Species:Mus musculus
Sequence 2:NP_525076.2 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:1745 Identity:504/1745 - (28%)
Similarity:772/1745 - (44%) Gaps:268/1745 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse   744 RNSERCQGRTVPLAVLQLRV---KHANETSL---------------GITWRAPLGEWEKYIISLM 790
            :||::.|...|.|.|..|.:   :|||...|               .|.:..|.|        ..
  Fly    44 QNSQQQQKHFVWLVVGILTIFLAQHANAADLVINVPNASSNANAFYRIDYSPPFG--------FP 100

Mouse   791 DRELLVIHKSLSKDAKEFTFTDLMPGRNYKATV--TSMSGDLKQSSSIKGRTVPAQVTDLHVNNQ 853
            :....:....:.||.|   |:..:||..|...:  |:.:...:.:.::...|.|....:|.|..:
  Fly   101 EPNTTIPASDIGKDIK---FSRALPGTEYNFWLYYTNSTHREQLTWTVNITTAPDPPANLSVQLR 162

Mouse   854 GMTSSLFTNW------------TKALG--DVEFYQVLLIHENVVVKNESVSSDTSRYSFRALKPG 904
            . :.|.|..|            .:.||  |:.|.:...:..|          :|.:.|.:.|.||
  Fly   163 S-SKSAFITWRPPGSGRYSGFRIRVLGLTDLPFERSYSLEGN----------ETLQLSAKELTPG 216

Mouse   905 SLYSVVVTTVSGGISSRQVVAEGRTVPSSVSGVTVNNSGRNDYLSVSWLP--APGEVDHYVVSLS 967
            ..|.|...:|..|..|....:...|...:..|..:........|.|.|.|  ..|...||.||::
  Fly   217 GSYQVQAYSVYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPFPAGIYTHYRVSIT 281

Mouse   968 HEGKVDQFLIIAK-----SVSECSFSSLTPGRLYNVTVTTKSGNYASHSFTEER--TVPDKVQGI 1025
            .:..:...|.:.:     ..::.:|..|.|||.||::|.|.|.:..|...|..|  |||::|..:
  Fly   282 PDDAIQSVLYVEREGEPPGPAQAAFKGLVPGREYNISVQTVSEDETSSVPTTARYLTVPERVLNV 346

Mouse  1026 SVSNS-ARSDYLKVSW--VHATGDFDHYEVTIK-NRESFIQTKTIPKSEN-ECEFIE----LVPG 1081
            :...: ..|...:|.|  .....:||.|:|.:. :|..|    .:|::.| :..:.:    |.||
  Fly   347 TFDEAYTTSSSFRVRWEPPRTYSEFDAYQVMLSTSRRIF----NVPRAANGDSVYFDYPDILEPG 407

Mouse  1082 RLYSVTVST---KSGQYEASEQGTGRTIPEPVKDL-TLLNRSTEDLHVTWSRA-NGDVDQYEVQL 1141
            |.|.|.|.|   ....:.||.:.|.|  |.||:.| ..|:..:..||::|..| .|..|.|.:..
  Fly   408 RTYEVVVKTIADNVNSWPASGEVTLR--PRPVRSLGGFLDDRSNALHISWEPAETGRQDSYRISY 470

Mouse  1142 --LFNDMKV---FP---HIHLVNTATEYKFTALTPGRHYKILVLTISGDVQQSAF-IEGLTVPST 1197
              ..|..:|   ||   ...:....|||...:|..||.|.|.|..:|..|..:|. |...|.|:.
  Fly   471 HEQTNASEVPAPFPVAAESQITTNLTEYTLDSLLAGRRYLIAVQALSKGVASNASDITRYTRPAA 535

Mouse  1198 --VKNIHISANGATDRLMVTWSPGGGDV----DSYVVSAFRQDEKVDSQTIPKHASEHTFHRLEA 1256
              ::.:.....|    ||::|.   .||    |.|.|. ::::...:.:|:..:.:..|.|.|..
  Fly   536 PLIQELRSIDQG----LMLSWR---SDVNSRQDRYEVH-YQRNGTREERTMATNETSLTIHYLHP 592

Mouse  1257 GAKYRIAIVSVSGSLRNQIDALGQTV-PASVQGVVAANAYSSNSLTVSWQKALG-------VAER 1313
            |:.|.:.:.::|..:|::..:..|.| |...|.:.....: :|.:.:.||...|       |..|
  Fly   593 GSGYEVKVHAISHGVRSEPHSYFQAVFPKPPQNLTLQTVH-TNLVVLHWQAPEGSDFSEYVVRYR 656

Mouse  1314 YD------ILLLNENGLLLSNVSEPATARQHKFEDLTPGKKYKMQILTVSGGLFSKESQAEGRTV 1372
            .|      |..|:||              :.:.:|:..|::|.:|:.|||.|:.|........|:
  Fly   657 TDASPWQRISGLHEN--------------EARIKDMHYGERYLVQVNTVSFGVESPHPLELNVTM 707

Mouse  1373 PAAVTNLRITENSSRYLSFGWTASEGELSWYNIFLYNPDRTLQERAQVDPLVQ---------SFS 1428
            |....:..:....||.|:..|...:|.:.:|.:..:..|.  ::|.:...:.|         ...
  Fly   708 PPQPVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWPTDE--EDRVEFKNVTQLEDLSSPSVRIP 770

Mouse  1429 FQNLLQGRMYKM-VIVTHSGELSNESFIFGRTVP--------AAVNHLKGSHRNTTDSLWFSWSP 1484
            .::|..||.|:. |..:.:|..|..:.:..||:|        |...|.:|.....|    .|::|
  Fly   771 IEDLSPGRQYRFEVQASSNGIRSGTTHLSTRTMPLIQSDVFIANAGHEQGQDETIT----LSYTP 831

Mouse  1485 ASGD---FDFYELILYNPNGTKKENWKEKDVTEWRFQGLVPGRKYTLYVVTHSGDLSN-KVTGEG 1545
            ...|   ||.|...:.:|....||........:..|.||.||:.|.:.|.|.||.::: .|....
  Fly   832 TPADSTRFDIYRFSMGDPTIKDKEKLANDTERKLSFSGLTPGKLYNVTVWTVSGGVASLPVQRLY 896

Mouse  1546 RTAPSPPSLLSFADVANTSLAITWKGPPDWTDYNDFELQWFPGDALTIFNPYSSRKSEGRIVYGL 1610
            |..|.|.|.|....||...:.:.|..|..  :|.|||||:...|........:..|:....:.||
  Fly   897 RLHPLPISDLKAIQVAAREITLHWTAPAG--EYTDFELQYLSADEEAPQLLQNVTKNTEITLQGL 959

Mouse  1611 HPGRSYQFSVKTVSGDSWKT------------YSKPISGSVRT---KPDKIQNLHCRPQNSTAIA 1660
            .|..:|.|:|...||....|            .|.|||.|.:|   .|.|:............:.
  Fly   960 RPYHNYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPISASYQTLTAPPGKVDYFQPSDVQPGEVT 1024

Mouse  1661 CSW-IPP---DSDFDGYSIECRK----MDTQEIEFSRKLEKEKSLLNIMMLVPHKRYLVSIKVQS 1717
            ..| :.|   ....|.:.|.|:.    .|....||.....:.|    |..|||...|:..|:.:|
  Fly  1025 FEWSLEPAEQHGPIDYFRITCQNADDAADVSSYEFPVNATQGK----IDGLVPGNHYIFRIQAKS 1085

Mouse  1718 A-GMTSEVVEDSTITMIDRPPQPPPHIRVNEKDVLISKSSINFTVNCSWFSDTNGAVKYFAVVVR 1781
            | |..:|.....|:.:: .||.|.|  .|...:|..:.|:|..:....:||:.:|.|:.:.:::.
  Fly  1086 ALGYGAEREHIQTMPIL-APPVPEP--SVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIA 1147

Mouse  1782 EADSMDELKPEQQHPLPSYLEYRHNASIRVYQT----NYFASKCAESPDSSSKSFNIKLGAEMDS 1842
            |    |..|......:||:.:.:.......||.    |.|.:.     :.|.||   .|.||..:
  Fly  1148 E----DVGKNASGLEMPSWQDVQAYTVWLPYQAIEPYNPFLTS-----NGSRKS---SLEAEHFT 1200

Mouse  1843 LG-GKCDPSQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSMPITTESEPLFG 1906
            :| ..||..|..:|:|||:..|.|||.|||||   |||  :||     ||.:|.|||||......
  Fly  1201 IGTANCDKHQAGYCNGPLRAGTTYRIKIRAFT---DED--KFT-----DTVYSSPITTERSDTVI 1255

Mouse  1907 VIEGVSAGLFLIGMLVALVAFFICRQKASHSRERPSARLSIRRDRPLSVHLNLGQKGNRKTSCPI 1971
            |...||| :.|:.|::.:|   .|:.:....|.  :::|:..:|...::     .:|....:.|:
  Fly  1256 VAATVSA-VLLVAMVLVVV---YCQHRCQLIRR--ASKLARMQDELAAL-----PEGYITPNRPV 1309

Mouse  1972 KINQFEGHFMKLQADSNYLLSKEYEDLKDVGRSQSCDIALLPENRGKNRYNNILPYDASRVKLCN 2036
            .:..|..|:..:.|||::..|:|:|:||.|||.|:|..|.||.||.|||:.||||||.||.||..
  Fly  1310 HVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQP 1374

Mouse  2037 VDDDPCSDYINASYIPGNNFRREYIATQGPLPGTKDDFWKMAWEQNVHNIVMVTQCVEKGRVKCD 2101
            ||||..||||||:|:||:|..||:|.|||||..|:::||:|.||.|...|||:|:|.||||.|||
  Fly  1375 VDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCD 1439

Mouse  2102 HYWPADQDPLYYGDLILQMVSESVLPEWTIREFKI---CSEEQLDAHRLIRHFHYTVWPDHGVPE 2163
            .|||.|:..::|||:.:|::.::...:|:|.||.:   |..      |::||||:|.|||.||||
  Fly  1440 QYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVSRNCES------RIMRHFHFTTWPDFGVPE 1498

Mouse  2164 TTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFVALDRILQQLDSKDSVDIYGAVHDLR 2228
            ..|||::|||..||.|...  ..|.:|||||||||:|||:|||||||.:...|.|||:|.|..:|
  Fly  1499 PPQSLVRFVRAFRDVIGTD--MRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMR 1561

Mouse  2229 LHRVHMVQTECQYVYLHQCVRDVLRAK--------KLRNEQENPLFPIYENVNPEYHRALHVAVT 2285
            ..||.|||||.|||.:|||:..||..|        :|.......:..||....|:         |
  Fly  1562 KERVFMVQTEQQYVCIHQCLLAVLEGKEHLLADSLELHANDGYEVTKIYLERQPQ---------T 1617

Mouse  2286 PTITFPLPLHNCALPIVLNHNMQSTRDIKNSPEDPLDKSVSLCDFKKKQKQKNKN 2340
            ...|.|:.. :.|:...|:.::.:.:|.....|....:.:.|.   .:.|.|..|
  Fly  1618 KMGTLPIRA-SLAMAEKLDADLMTNKDEDEDQEQQQQQQLQLA---TEVKPKGSN 1668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprbXP_036011586.1 beta-trefoil_Ricin_MRC-like 18..133 CDD:483961
Herpes_BLLF1 <158..>352 CDD:282904
FN3 <370..>545 CDD:442628
FN3 398..483 CDD:238020
fn3 579..658 CDD:394996
fn3 681..742 CDD:394996
fn3 757..835 CDD:394996 17/97 (18%)
FN3 856..1309 CDD:442628 125/505 (25%)
FN3 <1341..1674 CDD:442628 91/373 (24%)
fn3 1550..1632 CDD:394996 24/93 (26%)
fn3 1644..1723 CDD:394996 19/87 (22%)
PTP_tm 1761..1898 CDD:465889 45/141 (32%)
R-PTPc-B 2019..2246 CDD:350465 125/229 (55%)
Ptp4ENP_525076.2 FN3 <94..>334 CDD:442628 56/261 (21%)
fn3 247..328 CDD:394996 21/80 (26%)
FN3 319..>749 CDD:442628 114/460 (25%)
fn3 708..796 CDD:394996 17/89 (19%)
fn3 902..978 CDD:394996 23/77 (30%)
fn3 1013..1092 CDD:394996 18/82 (22%)
PTP_tm 1127..1247 CDD:465889 45/141 (32%)
R3-PTPc 1358..1579 CDD:350396 124/228 (54%)
Blue background indicates that the domain is not in the aligned region.

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