DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpra and Lar

DIOPT Version :9

Sequence 1:XP_036015592.1 Gene:Ptpra / 19262 MGIID:97808 Length:838 Species:Mus musculus
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:694 Identity:308/694 - (44%)
Similarity:427/694 - (61%) Gaps:49/694 - (7%)


- Green bases have known domain annotations that are detailed below.


Mouse   167 WAHSPNVISNSDSKDRRDETPIIAVMVAL--SSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLS 229
            |...|.|..|.:    :||..|:.|::.|  |:.:|...:|::..:.|              |..
  Fly  1364 WPAEPEVSVNRN----KDEPEILWVVLPLMVSTFIVSTALIVLCVVKR--------------RRQ 1410

Mouse   230 NGRTEDVEPQSVPLLA---------RSPSTNRK----------YPPLPVDKLEEEINRRMADDNK 275
            ..:|.|....:.||:|         ..|...|:          :||:|:.:....|.|..::||:
  Fly  1411 PCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQ 1475

Mouse   276 LFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGY 340
            .|.:|:.::.... |.|.:.::.|.||.||||.|:..||||||.|..||||..||||||::.:||
  Fly  1476 KFSQEYESIEPGQ-QFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGY 1539

Mouse   341 QEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSV 405
            ::.|.::|.|||.:||..|||||.||..||||||:|.|:||...||.||||.:|..|||.:.|::
  Fly  1540 RKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTI 1604

Mouse   406 EDVTVLVDYTVRKF--CIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNP 468
            .:...|..|::|.|  |.|...|      :|.|.|..||:|||.|||..|...|:||::.:|..|
  Fly  1605 TETQELATYSIRTFQLCRQGFND------RREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTP 1663

Mouse   469 QYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQA 533
            ..:|.::|||||||||||.::|||:||:.|..|:.:|:||.|:.:||||..||||:.||:||:.|
  Fly  1664 PESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDA 1728

Mouse   534 LLEHYLYGDTELEVTSLETHLQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMKKN 598
            :||..:.|.||:...:|.|||||:....||.:.:|:|.|||||:::|:.:.|..|.|||.|..||
  Fly  1729 ILEAIICGVTEVPARNLHTHLQKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKN 1793

Mouse   599 RVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSC 663
            |::.|:|||.:||.:....|.|.:||||||||||||.:.:|||:|||:....||||||:||..|.
  Fly  1794 RLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNST 1858

Mouse   664 SIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQF 728
            .:||||:|:|.|:|||.||||.:..|.|....|:...|.....|.:|:..||:.|:..||.:|||
  Fly  1859 IVVMLTKLKEMGREKCFQYWPHERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQF 1923

Mouse   729 HFHGWPEVGIPSDGKGMINIIAAVQKQQQQSG-NHPITVHCSAGAGRTGTFCALSTVLERVKAEG 792
            .|..|||.|:|..|:|.|:.|..|.|.::|.| :.|||||||||.||:|.|..||.||||::.||
  Fly  1924 QFIDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEG 1988

Mouse   793 ILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYAN 836
            :|||||||:.||.|||.||||.:||.|||:...||:.:|.:|.|
  Fly  1989 VLDVFQTVRILRSQRPAMVQTEDQYHFCYRAALEYLGSFDNYTN 2032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpraXP_036015592.1 R-PTPc-A-1 250..545 CDD:350469 138/306 (45%)
R-PTPc-A-2 599..826 CDD:350471 120/227 (53%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 126/261 (48%)
PTPc 1503..1731 CDD:238006 119/233 (51%)
PTPc 1763..2022 CDD:214550 136/258 (53%)
PTPc 1791..2022 CDD:238006 122/230 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100623
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.710

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