DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ndf and PDP3

DIOPT Version :10

Sequence 1:NP_001188767.1 Gene:Ndf / 192507 FlyBaseID:FBgn0043456 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_013560.3 Gene:PDP3 / 851177 SGDID:S000004447 Length:304 Species:Saccharomyces cerevisiae


Alignment Length:261 Identity:53/261 - (20%)
Similarity:90/261 - (34%) Gaps:78/261 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 DLIWAKMKGFTPWPGMIVDPPLDLLS----QQRRANTKCVFFFGSRNFAWIEENNIKPFEGPWKE 84
            ||:..|:..|.|||.::.  |..||.    ::|::|...|.||....:.|.:.:.:|..:     
Yeast     9 DLVLCKVGSFPPWPAVVF--PQRLLRNDVYRKRKSNCVAVCFFNDPTYYWEQPSRLKELD----- 66

  Fly    85 ELAKVSKPAAFRHAMTDIEKYI---DDPAEVDEQVNKSCGAPNHATEADFDK-IRDGLDSEEIVG 145
                          ...|..:|   ...|...|.||....|.|.   .||:. :::..:.|..:.
Yeast    67 --------------QDSIHNFILEHSKNANQRELVNAYKEAKNF---DDFNVFLQEKFEEENRLS 114

  Fly   146 EEATADGNNGVVAHVVGSPDEGDGLDVEINADSSASPVTSPAVTTKAAGKRTPKAKSV------- 203
            :....:.:.|  :.:|...|...|                   .||...||...:.|:       
Yeast   115 DLKAFEKSEG--SKIVAGEDPFVG-------------------RTKVVNKRKKNSISIKEDPEDN 158

  Fly   204 AATSVKSTKGSAKSAQKRRTSAQQ-SPSGPSNAKRGKRDVSGEALQDADEASSTPTGRRRVETDA 267
            ..::.:.:|.:.|.::|:|.:|.. ..|...|.|:.|.|.|                 ||||...
Yeast   159 QKSNEEESKPNIKPSKKKRPTANSGGKSNSGNKKKVKLDYS-----------------RRVEISQ 206

  Fly   268 L 268
            |
Yeast   207 L 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NdfNP_001188767.1 PWWP_GLYR1 20..106 CDD:438961 18/85 (21%)
MmsB 319..598 CDD:441687
PDP3NP_013560.3 PWWP_ScIOC4-like 8..95 CDD:438965 24/106 (23%)
Blue background indicates that the domain is not in the aligned region.

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