DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psmb1 and Prosbeta6

DIOPT Version :9

Sequence 1:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus
Sequence 2:NP_524115.1 Gene:Prosbeta6 / 39855 FlyBaseID:FBgn0002284 Length:235 Species:Drosophila melanogaster


Alignment Length:214 Identity:111/214 - (51%)
Similarity:165/214 - (77%) Gaps:2/214 - (0%)


- Green bases have known domain annotations that are detailed below.


Mouse    29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
            ||||..|||:::||||:||:::|:|||||.|::||:|...|.:||:.:||:|.:|...|.|:||.
  Fly    22 FSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTG 86

Mouse    94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ 158
            .|:.|::.|:|::.:.|||.|:|.|||..:|:||||||||.||:.|:|.||||.|||:||:|..:
  Fly    87 SIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCE 151

Mouse   159 RDSFKAGGSASAMLQPLLDNQVGFKNM--QNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALR 221
            :.:::|||:|..:|||:||||:|.|||  ::.:.:.||.:||:.:..|.||||||||:||||::.
  Fly   152 KATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVL 216

Mouse   222 ICIVTKEGIREETVPLRKD 240
            |.|:||:||...|:.||:|
  Fly   217 INIITKDGIEVRTLTLRQD 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Psmb1NP_035315.1 PRE1 18..240 CDD:223711 110/212 (52%)
proteasome_beta_type_1 29..240 CDD:239726 110/212 (52%)
Prosbeta6NP_524115.1 proteasome_beta_type_1 22..235 CDD:239726 110/212 (52%)
PRE1 24..225 CDD:223711 103/200 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850800
Domainoid 1 1.000 217 1.000 Domainoid score I2675
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2087
Inparanoid 1 1.050 242 1.000 Inparanoid score I3308
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54193
OrthoDB 1 1.010 - - D435362at33208
OrthoFinder 1 1.000 - - FOG0004805
OrthoInspector 1 1.000 - - oto95277
orthoMCL 1 0.900 - - OOG6_101631
Panther 1 1.100 - - LDO PTHR11599
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1009
SonicParanoid 1 1.000 - - X3385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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