DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PHC2 and Phc2

DIOPT Version :9

Sequence 1:NP_001372041.1 Gene:PHC2 / 1912 HGNCID:3183 Length:881 Species:Homo sapiens
Sequence 2:NP_001013187.2 Gene:Phc2 / 313038 RGDID:1307912 Length:850 Species:Rattus norvegicus


Alignment Length:886 Identity:755/886 - (85%)
Similarity:778/886 - (87%) Gaps:41/886 - (4%)


- Green bases have known domain annotations that are detailed below.


Human     1 MENELPVPHTSSSACATSSTSGASSSSGCNNSSSGGSGRPTGPQISVYSGIPDRQTVQVIQQALH 65
            ||||||||||||.|..|::|||.:|||||::||.|||||||.|||||||||||||||||||||||
  Rat     1 MENELPVPHTSSRASITTNTSGTNSSSGCSSSSGGGSGRPTAPQISVYSGIPDRQTVQVIQQALH 65

Human    66 RQPSTAAQYLQQMYAAQQQHLMLQTAALQQQHLSSAQLQSLAAVQQASLVSNRQGSTSGSNVSAQ 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||:|||||||||:||:|
  Rat    66 RQPSTAAQYLQQMYAAQQQHLMLQTAALQQQHLSSAQLQSLAAVQQASLVANRQGSTSGSSVSSQ 130

Human   131 APAQSSSINLAASPAAAQLLNRAQSVNSAAASGIAQQAVLLGNTSSPALTASQAQMYLRAQMAQP 195
            |||||||:|||||||||||:|||||||||.|||:||||||||||||||||||||||||||||   
  Rat   131 APAQSSSLNLAASPAAAQLINRAQSVNSATASGLAQQAVLLGNTSSPALTASQAQMYLRAQM--- 192

Human   196 GNLVQVARSLGGTVPLSPQLIFTPTATVATVQPELGTGSPARPPTPAQVQNLTLRTQQTP----A 256
                               |||||||||||||||||||||||||||||||||||||||||    |
  Rat   193 -------------------LIFTPTATVATVQPELGTGSPARPPTPAQVQNLTLRTQQTPAAAAA 238

Human   257 AAASGPTPTQPVLPSLALKPTPGGSQPLPTPAQSRNTAQASPAGAKPGIADSVMEPHKKGDGNSS 321
            ||||||.|||||||||||||||..|||||...|.|...|.||.||||.:.|:|.|| .|.|||| 
  Rat   239 AAASGPAPTQPVLPSLALKPTPSSSQPLPPTPQGRTVVQGSPVGAKPSVTDNVTEP-LKTDGNS- 301

Human   322 VPGSMEGRAGLSR-TVPAVAAHPLIAPAYAQLQPHQLLPQPSSKHLQPQFVIQQQPQPQQQQPPP 385
               :||.|.|..| |||.||.|.|.||||.|||||||||||||||.|||||.||||||       
  Rat   302 ---NMEARPGPDRATVPTVATHQLTAPAYTQLQPHQLLPQPSSKHPQPQFVAQQQPQP------- 356

Human   386 QQSRPVLQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANLHKPGGSQQCHPPTP 450
              .||..|.:..||||:||||:|||||.|.|||||||||.||||||.||::||||.|||||.|||
  Rat   357 --PRPTPQVQSQPQLAAVSPSLALQPSPEGHAMPLGPVTQALPLQCSTAHVHKPGSSQQCHLPTP 419

Human   451 DTGPQNGHPEGVPHTPQRRFQHTSAVILQLQPASPVPQQCVPDDWKEVAPGEKSVPETRSGPSPH 515
            |:|.||||||||.|.|||||||||||||||||||||||||.|||||||.|.|||||.||.|.|||
  Rat   420 DSGSQNGHPEGVSHAPQRRFQHTSAVILQLQPASPVPQQCAPDDWKEVVPAEKSVPVTRPGLSPH 484

Human   516 QQAIVTAMPGGLPVPTSPNIQPSPAHETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGEN 580
            ||||:||:|||||.|.|||||..||||||||||||||||||||||||||||||||.|||||||||
  Rat   485 QQAIITAIPGGLPGPKSPNIQQCPAHETGQGIVHALTDLSSPGMTSGNGNSASSITGTAPQNGEN 549

Human   581 KPPQAIVKPQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKKKYAQGFLPEKLPQQDHTTTTDSE 645
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   550 KPPQAIVKPQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKKKYAQGFLPEKLPQQDHTTTTDSE 614

Human   646 MEEPYLQESKEEGAPLKLKCELCGRVDFAYKFKRSKRFCSMACAKRYNVGCTKRVGLFHSDRSKL 710
            |||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   615 MEEPYLQESKEEGTPLKLKCELCGRVDFAYKFKRSKRFCSMACAKRYNVGCTKRVGLFHSDRSKL 679

Human   711 QKAGAATHNRRRASKASLPPLTKDTKKQPTGTVPLSVTAALQLTHSQEDSSRCSDNSSYEEPLSP 775
            ||||..|||||||||||||.|||||||||:|||||||||||||.|||||||||||||||||||||
  Rat   680 QKAGTTTHNRRRASKASLPTLTKDTKKQPSGTVPLSVTAALQLAHSQEDSSRCSDNSSYEEPLSP 744

Human   776 ISASSSTSRRRQGQRDLELPDMHMRDLVGMGHHFLPSEPTKWNVEDVYEFIRSLPGCQEIAEEFR 840
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
  Rat   745 ISASSSTSRRRQGQRDLELSDMHMRDLVGMGHHFLPSEPTKWNVEDVYEFIRSLPGCQEIAEEFR 809

Human   841 AQEIDGQALLLLKEDHLMSAMNIKLGPALKIYARISMLKDS 881
            |||||||||||||||||||||||||||||||||||||||||
  Rat   810 AQEIDGQALLLLKEDHLMSAMNIKLGPALKIYARISMLKDS 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHC2NP_001372041.1 PHA03247 <116..571 CDD:223021 347/459 (76%)
PHC2_SAM_assoc 693..812 CDD:406912 112/118 (95%)
SAM_Ph1,2,3 812..880 CDD:188976 67/67 (100%)
Phc2NP_001013187.2 PHC2_SAM_assoc 662..780 CDD:293222 111/117 (95%)
SAM_Ph1,2,3 781..849 CDD:188976 67/67 (100%)
SAM 783..850 CDD:197735 66/66 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83678115
Domainoid 1 1.000 1108 1.000 Domainoid score I1194
eggNOG 1 0.900 - - E1_28JS2
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H75090
Inparanoid 1 1.050 1470 1.000 Inparanoid score I2846
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG43859
OrthoDB 1 1.010 - - D120742at7742
OrthoFinder 1 1.000 - - FOG0006394
OrthoInspector 1 1.000 - - oto135970
orthoMCL 1 0.900 - - OOG6_116110
Panther 1 1.100 - - LDO PTHR12247
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X7161
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1717.310

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