DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PHC1 and phc1

DIOPT Version :10

Sequence 1:XP_011518905.1 Gene:PHC1 / 1911 HGNCID:3182 Length:1021 Species:Homo sapiens
Sequence 2:NP_991270.2 Gene:phc1 / 403008 ZFINID:ZDB-GENE-081022-39 Length:897 Species:Danio rerio


Alignment Length:1157 Identity:400/1157 - (34%)
Similarity:510/1157 - (44%) Gaps:404/1157 - (34%)


- Green bases have known domain annotations that are detailed below.


Human     4 ESEQNSNSTNGSSSSGGSSR-PQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNA-- 65
            |.:.||:|||.|::|||:|| ||||||||||||||||||||||||||||||.|.|||||:::|  
Zfish     5 EDQTNSSSTNSSAASGGNSRPPQIAQMSLYERQAVQALQALQRQPNAAQYFQQLMLQQQINSATC 69

Human    66 QLHSLAAVQQVRGQQPAGPRGRGQALQATIAASRQASSPNTSTTQQQTTTTQASINLATTSAAQL 130
            |||:|||||                 |||:|||||:||||.|.: |.|::.|.::||:||||...
Zfish    70 QLHNLAAVQ-----------------QATLAASRQSSSPNNSAS-QPTSSAQCTVNLSTTSAGGT 116

Human   131 ISRSQSV---SSPSATTLTQSVLLGNTTSPPLNQSQAQMYLRPQLGNLLQVNRTLGRNVPLASQL 192
            ::..:.:   :|.::|.|:||||||..:.     .|.|||||        |||:|  ..||..||
Zfish   117 MTNPRPIGPATSAASTALSQSVLLGGNSG-----GQGQMYLR--------VNRSL--RAPLTPQL 166

Human   193 ILMPNG----AVAAVQQEVPSAQ------------SPGVHADADQVQNLAVR------------- 228
            |.||.|    .||.|.|..|..|            |....:|.|||||||:|             
Zfish   167 IFMPGGTATATVATVAQTQPQQQPQQQQQQEATPTSSSSQSDNDQVQNLAMRCVSTPRAATVKTE 231

Human   229 -------------NQQASAQGPQMQGSTQKAIPPGASPV--------SSLSQASSQALAVAQASS 272
                         |||  .|.||..|.:.:.:.|...|:        |:.:..|..||.|.    
Zfish   232 FADRKETTGTFPLNQQ--TQTPQQFGQSTQQVQPQTQPLANAKLQSFSNTANPSVPALNVK---- 290

Human   273 GATNQSLNLSQAGGGSGNSIPGSMGPGGGGQAHGGLGQLPSSGMGGGSCPRKGTGVVQPLPAAQT 337
             ..|||....|..|.|.|  |.|..|            .||                  ||.:| 
Zfish   291 -PNNQSAVAPQQAGASSN--PPSSSP------------TPS------------------LPLSQ- 321

Human   338 VTVSQGSQTEAESAAAKKAEADGSGQQNVGMNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQ 402
            :.:||.                       |::.|| ..||      |:||.|    |.|:     
Zfish   322 LLLSQS-----------------------GLHQTR-GVPA------STATVT----HILV----- 347

Human   403 IHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQQPQATTLTAPQP 467
                                                                             
Zfish   348 ----------------------------------------------------------------- 347

Human   468 PQVPPTQQVPPS-----------QSQQQAQTLVVQPMLQSSP-------------LSLPPDAAPK 508
                ||..||.|           :|...||||||||:.|:..             :.:.|..|..
Zfish   348 ----PTSNVPTSTQGYPLGTVATKSNMTAQTLVVQPLQQTGANLSTEKLAHGTGHVPIQPKTAQG 408

Human   509 PPIPIQSK----PPVAPIKPPQLGAAKMSAAQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAV 569
            ..:|:|..    ||:.| .||..|.|   .|...|||:|||:||.||.....:|||.|||.....
Zfish   409 HRVPVQMSPRHPPPILP-APPNNGQA---TAGLHPPHVPVQLVGARQSTLGNSQALALAQARTCC 469

Human   570 PTSRGMPGTVQSGQAHLASSPPSSQAPGALQECPPTLAPGMTLAPVQGTAHVVKGGATTSSPVVA 634
                    :.|.|.|.:..:.|.:..  .:.....|...||.|...| :|..:....|..|.|:.
Zfish   470 --------SQQDGTAAVGVNNPGNVV--TMVTAMDTSGAGMCLKTAQ-SALPISQMQTNQSAVLT 523

Human   635 Q-VPA--------------AFYMQSVHLPGKPQTLAVKRKADSEEERDDVSTLGSMLPAKASPVA 684
            | .||              :.::||.....||....:|||::|:... ::|.         .|::
Zfish   524 QGNPASVTHSMDGQNNSGDSLFVQSAQAQIKPAIGPIKRKSESDLTH-EISN---------EPIS 578

Human   685 ESPKVMDEKSSLGEKAESVANVNANTPSSELVALTPAPS---VP------PPTLAMV-------S 733
            .||.:.|                 :.|     .|:||||   ||      ||||::.       .
Zfish   579 GSPSMQD-----------------SAP-----PLSPAPSLDTVPEIAFSSPPTLSLSLPVPLPRG 621

Human   734 RQMGDSKP-PQAIVKPQILTHIIEGFVIQEGAEPFPVGCSQLLKESEKPLQTGLPTGLTENQSGG 797
            ...||..| |||:||||:|||:|||||||||||||||                  ||..:..||.
Zfish   622 AGQGDRAPVPQAVVKPQVLTHLIEGFVIQEGAEPFPV------------------TGPLKELSGA 668

Human   798 PLGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRKKMKEF 862
            ...:..|.   |.:::.||||||..:|||.|||.|||||:::|:||||||..:..|..|......
Zfish   669 VPPILHPE---DIRSDKLKCEYCLNFAPASQFRRSKRFCTISCSKRYNVSFRNHLRASRGLEGAE 730

Human   863 QEANYARV-----RRRGPRRSSSDIARAKIQG-----KCHRGQEDSSRGSDNSSYDE-------A 910
            :.|....|     |||.||||||:||.|||.|     ||   :.:|||..|.||.:.       :
Zfish   731 RPAGGPVVQDVIARRRAPRRSSSEIACAKITGRHLPVKC---RSESSRSDDISSCEGEEEEDFLS 792

Human   911 LSPTS----PGPLSVRAGHGERDLGNPNTAP---PTPELHGINPVFLSSNPSRWSVEEVYEFIAS 968
            |||:|    |.|.     |....|  .:|||   |..|.|     |||.||:.|||:||.:||:|
Zfish   793 LSPSSTFSCPRPT-----HCGPQL--DDTAPGGLPVDENH-----FLSGNPADWSVQEVCQFISS 845

Human   969 LQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAKINVLKE 1020
            ||||:::|.:|.|||||||||:|||||||||.|||||||||||||.||.|::
Zfish   846 LQGCEDLASQFLSQEIDGQALMLLKEEHLMSTMNIKLGPALKICASINSLRD 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHC1XP_011518905.1 PHA03247 <491..687 CDD:223021 57/227 (25%)
PHC2_SAM_assoc 845..952 CDD:465202 46/130 (35%)
SAM_Ph1,2,3 952..1020 CDD:188976 50/67 (75%)
phc1NP_991270.2 None

Return to query results.
Submit another query.