DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PHC1 and Phc1

DIOPT Version :9

Sequence 1:XP_011518905.1 Gene:PHC1 / 1911 HGNCID:3182 Length:1021 Species:Homo sapiens
Sequence 2:XP_006237362.1 Gene:Phc1 / 312690 RGDID:1309203 Length:1045 Species:Rattus norvegicus


Alignment Length:1033 Identity:931/1033 - (90%)
Similarity:957/1033 - (92%) Gaps:30/1033 - (2%)


- Green bases have known domain annotations that are detailed below.


Human     1 METESEQNSNSTNGSSSSGGSSRPQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNA 65
            |||||||||:|||||||||.|||||||||||||||||||||||||||||||||||||||||||||
  Rat    31 METESEQNSSSTNGSSSSGASSRPQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNA 95

Human    66 QLHSLAAVQQVRGQQPAGPRGRGQALQATIAASRQASSPNTSTTQQQTTTTQASINLATTSAAQL 130
            |||||||||                 ||||||||||||||:||.||||.||||||||||||||||
  Rat    96 QLHSLAAVQ-----------------QATIAASRQASSPNSSTAQQQTATTQASINLATTSAAQL 143

Human   131 ISRSQSVSSPSATTLTQSVLLGNTTSPPLNQSQAQMYLRPQLGNLLQVNRTLGRNVPLASQLILM 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   144 ISRSQSVSSPSATTLTQSVLLGNTTSPPLNQSQAQMYLRPQLGNLLQVNRTLGRNVPLASQLILM 208

Human   196 PNGAVAAVQQEVPSAQSPGVHADADQVQNLAVRNQQASAQGPQMQGSTQKAIPPGASPVSSLSQA 260
            |||||||||||||.|||||||||||||||||||||||||||||:.|||||||||||||||.||||
  Rat   209 PNGAVAAVQQEVPPAQSPGVHADADQVQNLAVRNQQASAQGPQIPGSTQKAIPPGASPVSGLSQA 273

Human   261 SSQALAVAQASSGATNQSLNLSQAGGGSGNSIPGSMGPGGGGQAHGGLGQLPSSGMGGGSCPRKG 325
            |||||||||| |||:.|||||||||||||||:||||||||||||.||||||||||:.||:|||||
  Rat   274 SSQALAVAQA-SGASGQSLNLSQAGGGSGNSLPGSMGPGGGGQAPGGLGQLPSSGLAGGNCPRKG 337

Human   326 TGVVQPLPAAQTVTVSQGSQTEAESAAAKKAEADGSGQQNVGMNLTRTATPAPSQTLISSATYTQ 390
            ||||||||||||||||||||||||||||||||.|||.||:|||||||||||||||||||||||||
  Rat   338 TGVVQPLPAAQTVTVSQGSQTEAESAAAKKAEGDGSSQQSVGMNLTRTATPAPSQTLISSATYTQ 402

Human   391 IQPHSLIQQQQQIHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLA------------QQ 443
            |||||||||||||||||||||||||||||||||||||||||||||||||||            ||
  Rat   403 IQPHSLIQQQQQIHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQ 467

Human   444 QQQQQQQQQQQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPK 508
            |||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||:..||
  Rat   468 QQQQQQQQQQQQQQQATTLAAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPEPTPK 532

Human   509 PPIPIQSKPPVAPIKPPQLGAAKMSAAQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSR 573
            ||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
  Rat   533 PPIPIQSKPPVAPIKPPQLGAAKMSATQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSR 597

Human   574 GMPGTVQSGQAHLASSPPSSQAPGALQECPPTLAPGMTLAPVQGTAHVVKGGATTSSPVVAQVPA 638
            ||||.||.||||||||.||||||||||||||.||.|||||||||||||||||.|.||||||||||
  Rat   598 GMPGAVQPGQAHLASSQPSSQAPGALQECPPALATGMTLAPVQGTAHVVKGGPTASSPVVAQVPA 662

Human   639 AFYMQSVHLPGKPQTLAVKRKADSEEERDDVSTLGSMLPAKASPVAESPKVMDEKSSLGEKAESV 703
            ||||||||||||.|||||||||:|||||:|:|.|||:||.||||.||||||::||:||.||||.|
  Rat   663 AFYMQSVHLPGKAQTLAVKRKAESEEEREDLSALGSVLPTKASPAAESPKVIEEKNSLVEKAEPV 727

Human   704 ANVNANTPSSELVALTPAPSVPPPTLAMVSRQMGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFP 768
            |::|||.|:|:||||.|.||.||||||:|||||||||||||||||||||||||||||||||||||
  Rat   728 ASLNANPPNSDLVALAPTPSAPPPTLALVSRQMGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFP 792

Human   769 VGCSQLLKESEKPLQTGLPTGLTENQSGGPLGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSK 833
            |||||.|||:||||..||||||.|:|||||||.|||..:||||||||||||||||||||||||||
  Rat   793 VGCSQFLKETEKPLPAGLPTGLNESQSGGPLGGDSPCVDLDKKANLLKCEYCGKYAPAEQFRGSK 857

Human   834 RFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEANYARVRRRGPRRSSSDIARAKIQGKCHRGQEDS 898
            ||||||||||||||||||||||||||||||||:||||||||||||||||||||||||.|||||||
  Rat   858 RFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEASYARVRRRGPRRSSSDIARAKIQGKRHRGQEDS 922

Human   899 SRGSDNSSYDEALSPTSPGPLSVRAGHGERDLGNPNTAPPTPELHGINPVFLSSNPSRWSVEEVY 963
            ||||||||||||||||||||||||||||||||||..|.|.||||.||||||||||||:|||||||
  Rat   923 SRGSDNSSYDEALSPTSPGPLSVRAGHGERDLGNTITTPSTPELQGINPVFLSSNPSQWSVEEVY 987

Human   964 EFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAKINVLKET 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   988 EFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAKINVLKET 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHC1XP_011518905.1 zf-FCS 809..844 CDD:283998 34/34 (100%)
PHC2_SAM_assoc 845..951 CDD:293222 98/105 (93%)
SAM_Ph1,2,3 952..1020 CDD:188976 66/67 (99%)
SAM 954..1021 CDD:197735 65/66 (98%)
Phc1XP_006237362.1 zf-FCS 833..868 CDD:283998 34/34 (100%)
PHC2_SAM_assoc 869..975 CDD:293222 98/105 (93%)
SAM_Ph1,2,3 976..1044 CDD:188976 66/67 (99%)
SAM 978..1045 CDD:197735 65/66 (98%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83685766
Domainoid 1 1.000 1474 1.000 Domainoid score I611
eggNOG 00.000 Not matched by this tool.
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H107079
Inparanoid 1 1.050 1805 1.000 Inparanoid score I1855
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG43859
OrthoDB 1 1.010 - - D120742at7742
OrthoFinder 1 1.000 - - FOG0009169
OrthoInspector 1 1.000 - - oto134541
orthoMCL 1 0.900 - - OOG6_112834
Panther 1 1.100 - - LDO PTHR12247
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X8508
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1616.410

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