Sequence 1: | NP_035289.2 | Gene: | Prkdc / 19090 | MGIID: | 104779 | Length: | 4128 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001284967.1 | Gene: | nonC / 31625 | FlyBaseID: | FBgn0263968 | Length: | 3218 | Species: | Drosophila melanogaster |
Alignment Length: | 2859 | Identity: | 514/2859 - (17%) |
---|---|---|---|
Similarity: | 912/2859 - (31%) | Gaps: | 1068/2859 - (37%) |
- Green bases have known domain annotations that are detailed below.
Mouse 1520 GGLCDHLVSLLLNSAML---STQYLGSSQRNISFSHGEYFYSLFSEVINSELLKNLDIAVSRLME 1581
Mouse 1582 S--SSDNPKMVSTVLNGMLDTSFRDRAVQKHQGLKLATAILQNWRKCDSWWAPDSA----PESKT 1640
Mouse 1641 TVLSLLAKMLQIDSALSFDT----------NHSSFSE-----IFTTYASLLADTKLGLHLKGQAI 1690
Mouse 1691 ILLPFFTSLREGSLENLKHILEKLIVCN-FPMKSDEFPPDSLKYNNYVDCMKKFLDA-------- 1746
Mouse 1747 LELSQ---------------SP-----------MLFQLMTDILCREQ---RHIMEEL------FQ 1776
Mouse 1777 TTFKRIARQS--------PCVTQL---NLLESVYTMFRKADLPSNVTRQAFVDRSLLT------- 1823
Mouse 1824 -LLWHCDLDTLKEFFS----------RIVVDAIDVLKSRFT-KLNEFTFDTQ--ITK-------- 1866
Mouse 1867 -------KMCYYKML---------AVMYSRLLKDDV--------------HSKEAKINQAFHGSR 1901
Mouse 1902 VAEGNELTKTLLKLCHDAFTENMVGESQLLEKRRLYHCAAYNCAISLISCVFNELKFYQGFLFNE 1966
Mouse 1967 KPEKNLFIFENLIDLKRCYTFPIEVEVPMERKKKYIEIRKEARDAANGASGSPHYMSSLSYLTDS 2031
Mouse 2032 SLSEEMSQFDFSTGVQSYSYSSQDRKPTTGHFQRREHQDSMTQDDIMELEMDELNQHECMAPMIA 2096
Mouse 2097 LIKHMQRNVIAPKGEEGSIPKDLPPWMKFLHDKLGNAS--VSLNIRLFLAKLVINTEEVFRPYAK 2159
Mouse 2160 HWLSPLLQLAVCENNREGIHYMMVE---------IVATILSWTGLATPTGVPKDEVLANRLLRFL 2215
Mouse 2216 MKHVFHPKRAVFRHNLEIIKTLVECWKECLSIPYRLIFEKFSHKDPNSKDNSVGIQLLGIVIANN 2280
Mouse 2281 LPPYDPNCDITSAMYFEALVNNMSFVKYKEVYAAAAEVLGL---------------------ILQ 2324
Mouse 2325 YITERKHVIAELVCELVIKQLKQHQNTMEDKFIVCLNKI---AKGFPPLADRFLNALFFLLPKFH 2386
Mouse 2387 GVMKTLCLEVVLCRAEEITGLYLQLKSKDFLQVMRHRDDERQKVCLDIVYKMVAKLKPIELR--E 2449
Mouse 2450 LLNPVVEFVSHPSPTCREQMYNILMWIHDNYRDQESQNDEDSQEIFKLAKDV-LIQGLIDENVGL 2513
Mouse 2514 QLIIRNFWSHETRLPSNTLDRLLALNSLYS---PKIEVHFLSLATNFLLEMTRMSPDYLNPIFEH 2575
Mouse 2576 PLSECEFQEYTIDPDW--RFR-STVLTPMFIETQASPSILHTQTQEGPLSDQRQKPGQVRATQQQ 2637
Mouse 2638 YDFTPTQASVERS-------------------------SFDWL-------TGSSIDLLADH-TVF 2669
Mouse 2670 SSETLSSSLLFSHKRTEKSQRMSC-KSVGP-----DFGTKKLGLPDDEVDNQVKSGTPSQADILR 2728
Mouse 2729 LRRRFLKDREKLSLLYAKRGLMEQ----------------KLEKDIKSEFKMKQDAQ-VVLYRSY 2776
Mouse 2777 RHGDLP-------DIQIQHSGLITPLQAVAQKDPIIAKQLFSSLFSGILKEMNKFKTTSEKNIIT 2834
Mouse 2835 QNLLQDFNRFLNTTFLFFPPFVSCI--QEISCQHPDFLTLDPASVRVGCL---ASLQQPGGIRLL 2894
Mouse 2895 EEALLRLMPKEPPTKRV-------RGKTCLPPDVLR-WMELAK-LYRSIGEYDVLRGIFSSELGT 2950
Mouse 2951 TQDTQNALLAEARSDYCQAAKLYDEALNKLEWVDGEPTEAEKEFWELASLDCYNNLSKWKELEYC 3015
Mouse 3016 STVNIVSENSLDLSKMWSEPFYQETYLPYVIRSKLKLLLQGEGNQS--LLTFVDEAMNKELQKTV 3078
Mouse 3079 LELQYSQELSLLYILQDDIDRATYYIKNGIQIFMQ---NYSSIDVLLYRSRLAKLQSVQTLAEIE 3140
Mouse 3141 EFLSFICKHGDLSSLGPLRRLLKTWTSRYPDVVTDPMHIWDDIITNRCFFLSK-----IEERLTA 3200
Mouse 3201 PSGDHSMSVDEDEESIDREVYEPKEDVRCMLQSCRFTMKMKMIESAWKQSNFSLSMKLLKEMHKE 3265
Mouse 3266 S--KTREIWRVQWLHSYSQL-NHCRSHTQSPREQVLNMLKTITLLDESDISNYLNKNIQASCDQS 3327
Mouse 3328 ILLGTTCRIMADALSREPACLSDLEENKVNSILTLSGSNAENTETVITGLYQRAFHH---LSKAV 3389
Mouse 3390 -----QSAEEETQLSCWGHEAAAERAHAYMTLVGFCDQQLRKVEESASQKTSAEMEAYPALVVEK 3449
Mouse 3450 MLRALKLNSSEARLKFPRLLQIIEQYSEETLNIMTKEISSIPC--WQFIGWISHMMALLDKEEAI 3512
Mouse 3513 AVQHTVEEIADNYPQAIIYPFIISSESYSFK-NTSSGHNNKAFVERIKSKLDHGEVIHSFINALD 3576
Mouse 3577 QLSNPDLLFKDWVSDTKDELGKNPVNKKNIEKLYERMYAALGDLRAPGLGPFR--------RRFI 3633
Mouse 3634 QAFGK----------EFVKSFGNGGSKLLTMKVDD----FCKITGSLLVRMKKDSKLPGNLKEYS 3684
Mouse 3685 PWMSEFKAQFLKNELEIPGQYDGKSKPLPEYHVRISGFDERVKVMLSLRKPKRIVIRGHDEKEYP 3749
Mouse 3750 FLVKGGEDLRQDQRIEQIFEVMNAILS--QDA---ACSQRNMQLRTYRVVPMTSRLGLIEWIENT 3809
Mouse 3810 MTLKDLLLSNMSQEEKVANNSDPKAPIRDYKDWLMK---VSGKSDAGAYV--------LMYSRAN 3863
Mouse 3864 ----RTETVVAFRRRE--------------SQVPPDLLKR-AFVKMSTSPEAFLALRSHFASSHA 3909
Mouse 3910 LLCISHWLLGIGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLPM 3974
Mouse 3975 KETG------LMCTVMVHALRAFRSCAGLLTDTMEIFVKEPSFDWKSFE--QTMLRKGGSWIQE 4030 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Prkdc | NP_035289.2 | HEAT 1 | 288..323 | ||
HEAT 2 | 1001..1037 | ||||
HEAT 3 | 1050..1086 | ||||
Interaction with C1D. /evidence=ECO:0000250 | 1501..1536 | 5/15 (33%) | |||
Leucine-zipper | 1501..1536 | 5/15 (33%) | |||
TPR 1 | 1720..1753 | 8/55 (15%) | |||
ArAE_1_C | <1766..1822 | CDD:288564 | 11/75 (15%) | ||
NUC194 | 1812..2198 | CDD:285387 | 75/455 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 2049..2071 | 4/21 (19%) | |||
KIP-binding. /evidence=ECO:0000250 | 2432..3213 | 143/876 (16%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 2614..2635 | 3/20 (15%) | |||
FAT | 3024..3470 | CDD:280429 | 72/466 (15%) | ||
PIKKc_DNA-PK | 3719..4014 | CDD:270716 | 89/335 (27%) | ||
FATC | 4097..4128 | CDD:280430 | |||
nonC | NP_001284967.1 | SMG1 | 571..1140 | CDD:292413 | 138/887 (16%) |
Rapamycin_bind | 1738..1845 | CDD:285924 | 31/167 (19%) | ||
PIKKc_SMG1 | 1894..2196 | CDD:270714 | 90/336 (27%) | ||
FATC | 3189..3217 | CDD:280430 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5032 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D26975at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |