DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pparg and Hr96

DIOPT Version :10

Sequence 1:NP_035276.2 Gene:Pparg / 19016 MGIID:97747 Length:505 Species:Mus musculus
Sequence 2:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster


Alignment Length:380 Identity:99/380 - (26%)
Similarity:143/380 - (37%) Gaps:104/380 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse   130 PSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQY 192
            |.|      |.||||||.|:::....||.||.||||....|..: .|  :.||.|...:|..||.
  Fly     4 PKN------CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQF-TCPFNQNCDITVVTRRFCQK 61

Mouse   193 CRFQKCLAVGMSHNAIRFGRMPQAEKEKL--------------LAEISSD-IDQLNPESADLRAL 242
            ||.:|||.:||....|      .:|::||              |.|..:| .|....|..|.:|.
  Fly    62 CRLRKCLDIGMKSENI------MSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAP 120

Mouse   243 A-------KHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKI---------- 290
            |       .| |.....|.....|.:.|.........||..  .:|.|.|..:||          
  Fly   121 ADSSSSNLDH-YSGSQDSQSCGSADSGANGCSGRQASSPGT--QVNPLQMTAEKIVDQIVSDPDR 182

Mouse   291 KFKHITPLQEQSKEVAIRIFQ---GCQFRSVEAVQEITEY----AKNIPGFINLDLNDQVTLLKY 348
            ..:.|..|....|| ||.:.:   ..|..::..|..:.:|    .|.|..|:|...|......|:
  Fly   183 ASQAINRLMRTQKE-AISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKF 246

Mouse   349 ------GVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSL-RKPFGDFMEPKFEFAVKFNALE 406
                  || |||    :.:::....::         ||:::| ..|     |...:...||    
  Fly   247 MSSPTDGV-EII----SKIVDSPADVV---------EFMQNLMHSP-----EDAIDIMNKF---- 288

Mouse   407 LDDSDLAIFIAVIILSG----------DRPGLLN----VKPIEDIQ--DNLLQAL 445
            ::....|:.|...||||          ||..||:    |||....:  |.::|::
  Fly   289 MNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSM 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpargNP_035276.2 PPARgamma_N 31..108 CDD:463633
NR_DBD_Ppar 138..221 CDD:143523 33/84 (39%)
Interaction with FAM120B. /evidence=ECO:0000269|PubMed:17595322 205..280 19/96 (20%)
NR_LBD_PPAR 237..504 CDD:132730 57/256 (22%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P37231 495..503
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 36/105 (34%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
Blue background indicates that the domain is not in the aligned region.

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