DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pou3f3 and Antp

DIOPT Version :9

Sequence 1:NP_032926.2 Gene:Pou3f3 / 18993 MGIID:102564 Length:497 Species:Mus musculus
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:429 Identity:82/429 - (19%)
Similarity:117/429 - (27%) Gaps:165/429 - (38%)


- Green bases have known domain annotations that are detailed below.


Mouse    85 NGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVK 149
            ||..|.......|.:.|.:.::.........:.:        |..|.|||..|....|.|....:
  Fly    70 NGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTN--------GQLGVPQQQQQQQQQPSQNQQQQ 126

Mouse   150 GGAGREDLHAGTALHHRGPPHLGPPPPPPHQ--GHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQ 212
            ..             .:.|..|....|...|  .||..........|:....||...|..:..|.
  Fly   127 QA-------------QQAPQQLQQQLPQVTQQVTHPQQQQQQPVVYASCKLQAAVGGLGMVPEGG 178

Mouse   213 QPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDT----PELAEHHHHH 273
            .||    |..|..|..:|..::.|...|              ||....|.|    |::.|.|.:|
  Fly   179 SPP----LVDQMSGHHMNAQMTLPHHMG--------------HPQAQLGYTDVGVPDVTEVHQNH 225

Mouse   274 HHHAHPH----------PPH--PHHAQGPP--HHGGGGAGPGLNSHDPHSDEDTPTSDDL----- 319
            |:.....          ||.  .|..||||  |.|..|      .|.|.|......|..:     
  Fly   226 HNMGMYQQQSGVPPVGAPPQGMMHQGQGPPQMHQGHPG------QHTPPSQNPNSQSSGMPSPLY 284

Mouse   320 ----EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKW 380
                .||.|..:::|                      .:.|..|::.|:|               
  Fly   285 PWMRSQFGKCQERKR----------------------GRQTYTRYQTLEL--------------- 312

Mouse   381 LEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKE 445
                          :|.....|...:|..||:                        |.:|.|.:.
  Fly   313 --------------EKEFHFNRYLTRRRRIEI------------------------AHALCLTER 339

Mouse   446 VVRVWFCNRRQKEKR----------------MTPPGIQQ 468
            .:::||.|||.|.|:                :|||...|
  Fly   340 QIKIWFQNRRMKWKKENKTKGEPGSGGEGDEITPPNSPQ 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pou3f3NP_032926.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..62
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..189 14/69 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 230..316 25/103 (24%)
POU 311..385 CDD:197673 9/82 (11%)
Homeobox 406..460 CDD:395001 12/53 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..497 5/27 (19%)
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 40/190 (21%)
Homeobox 301..354 CDD:395001 18/105 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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