DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pou3f3 and pdm2

DIOPT Version :9

Sequence 1:NP_032926.2 Gene:Pou3f3 / 18993 MGIID:102564 Length:497 Species:Mus musculus
Sequence 2:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster


Alignment Length:412 Identity:140/412 - (33%)
Similarity:181/412 - (43%) Gaps:118/412 - (28%)


- Green bases have known domain annotations that are detailed below.


Mouse   114 AVEASSPWSGSAVGMAGSPQQPPQ-----------PPPPPPQGPDVKGGAGREDLHAGTALHHRG 167
            |.|..|......:.:|..|::..:           ||.|....|:....|.:..||:...:..:.
  Fly   491 ARELDSELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQLHSYIEMVRQL 555

Mouse   168 PPHLGPPP-------------------------------PPPHQGHPGGWGAAAAAAAAAAAAAA 201
            .|...|.|                               |.|....|        .|.:...:.:
  Fly   556 APEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTP--------LAKSPLRSPS 612

Mouse   202 AAHLPSMAGGQQPPPQSLLYSQPGGFTVN--GMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTP 264
            .:.:|..:..||..|       |...|.|  ||.||...|                      :||
  Fly   613 LSPVPRHSKSQQRTP-------PNSMTANSLGMSSAVMTP----------------------NTP 648

Mouse   265 ELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQR 329
            .:.:              .|...|..|....|.......:....|.|:|...::||||||.||||
  Fly   649 SMQQ--------------QPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTFKQR 699

Mouse   330 RIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS------- 387
            ||||||||.|||||:|.||||.||||||.|||||.|||||||||||||.||||:|||:       
  Fly   700 RIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGG 764

Mouse   388 -----------TGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQ 441
                       :.:|.||     .||:||||||||.:|:..||..||...||:::||:.|::.|.
  Fly   765 VFNINTMTSTLSSTPESI-----LGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLN 824

Mouse   442 LEKEVVRVWFCNRRQKEKRMTP 463
            ::|||:|||||||||||||:.|
  Fly   825 MDKEVIRVWFCNRRQKEKRINP 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pou3f3NP_032926.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..62
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..189 15/109 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 230..316 15/87 (17%)
POU 311..385 CDD:197673 58/73 (79%)
Homeobox 406..460 CDD:395001 31/53 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..497 4/6 (67%)
pdm2NP_001285877.1 POU 691..755 CDD:197673 54/63 (86%)
Homeobox 789..842 CDD:278475 30/52 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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