DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pou3f3 and nub

DIOPT Version :9

Sequence 1:NP_032926.2 Gene:Pou3f3 / 18993 MGIID:102564 Length:497 Species:Mus musculus
Sequence 2:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster


Alignment Length:440 Identity:165/440 - (37%)
Similarity:205/440 - (46%) Gaps:120/440 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse   101 PHAAAAAAAAAAAAVEASSPWSG-----SAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRED---- 156
            |::.|||||||||.  ||:..||     :..||: |||............|.:.|....:|    
  Fly   547 PNSMAAAAAAAAAV--ASTMGSGISPLLALPGMS-SPQAQLAAAGLGMNNPLLTGSLSPQDFAQF 608

Mouse   157 ---------------------LHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAA---- 196
                                 |.:|:         ||.....|         |..|..|||    
  Fly   609 HQLLQQRQVALTQQFNSYMELLRSGS---------LGLAQDDP---------ALTAQVAAAQFLM 655

Mouse   197 -----AAAAAAAHLPSMAGGQQ---PPPQSL---LYSQPGGFTVNGMLSAPPGPGGGGGGAGGGA 250
                 |.:.|:..|.::...||   ..|..|   :..||...|.:.:.|                
  Fly   656 QSQLQALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRS---------------- 704

Mouse   251 QSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPH-------------------PHHAQG---PPHH 293
                 |..:|.......:.||||||.....||.                   ...:||   |...
  Fly   705 -----PIAIRSPASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTTPQPK 764

Mouse   294 GGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC 358
            ....|.....:.:| |.|:|...::||||||.||||||||||||.|||||:|.||||.||||||.
  Fly   765 TVASAAAARAAGEP-SPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 828

Mouse   359 RFEALQLSFKNMCKLKPLLNKWLEEAD---SSTG---SPTSIDKIAAQ----GRKRKKRTSIEVS 413
            |||||.|||||||||||||.|||::||   .:||   .|.::....:.    ||:||||||||.:
  Fly   829 RFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETT 893

Mouse   414 VKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTP 463
            ::||||..||...||:::|||.|||.|.:||||||||||||||||||:.|
  Fly   894 IRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINP 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pou3f3NP_032926.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..62
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..189 15/97 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 230..316 19/107 (18%)
POU 311..385 CDD:197673 57/73 (78%)
Homeobox 406..460 CDD:395001 37/53 (70%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..497 4/6 (67%)
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 53/63 (84%)
Homeobox 886..939 CDD:278475 36/52 (69%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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