DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pou2f1 and nub

DIOPT Version :10

Sequence 1:NP_035267.2 Gene:Pou2f1 / 18986 MGIID:101898 Length:793 Species:Mus musculus
Sequence 2:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster


Alignment Length:562 Identity:216/562 - (38%)
Similarity:281/562 - (50%) Gaps:129/562 - (22%)


- Green bases have known domain annotations that are detailed below.


Mouse    22 SRMNNPSETNKSSMESEDASTGTQTNGLDFQKQPVPVGGAISTAQAQA----------------- 69
            ||..:|.::|.|..:..::|.||.::     :...|:..|:|.:..||                 
  Fly   409 SRSPSPLQSNASDCDDNNSSVGTSSD-----RCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHN 468

Mouse    70 --FLGHL--HQVQLAGTSLQAAAQSLNVQSKSSEESGDSQQS-------------SQPSSQPPSV 117
              .|.||  ||.:.......|...:||:.|.:|..|..|..:             |.||..||.:
  Fly   469 PHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSVKSATASPVPVISVPSPVPPMI 533

Mouse   118 QSAI------------------------------------------PQTQLMLAG-GQ----ITG 135
            ...:                                          ||.||..|| |.    :||
  Fly   534 SPVLAPSGCGSTTPNSMAAAAAAAAAVASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTG 598

Mouse   136 LTLTP---AQQQLLLQQAQAQAQLLAAAVQQHSASQQHSAAGA----------TISASAATPMTQ 187
             :|:|   ||...||||.|      .|..||.::..:...:|:          |...:||..:.|
  Fly   599 -SLSPQDFAQFHQLLQQRQ------VALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQ 656

Mouse   188 IPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQL 252
            ..|....|.:|.||.||:.||:.:: :...|.|..|. ||.    |.||...:..:..::..:. 
  Fly   657 SQLQALSQASQQLQALQKQQQRQVD-EPLQLNHKMTQ-QPR----SSTPHSIRSPIAIRSPASS- 714

Mouse   253 PQQ---SQANLLQPQP-----SITLTSQ--PTTPTRTIAAASVQTLPQ-----SQSTPKRIDTPS 302
            |||   ...:.||..|     |:.|:..  |:|||.....:...|.||     |.:..:....||
  Fly   715 PQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEPS 779

Mouse   303 LEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 367
            .||.:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   780 PEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 844

Mouse   368 PLLEKWLNDAE-NLSSDSTASSPSALNSPGLGAEGLNRRRKKRTSIETNIRVALEKSFMENQKPT 431
            |||:|||:||: .:.:......|:||.:.....|.:.|||||||||||.||.||||:|:.|||||
  Fly   845 PLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPT 909

Mouse   432 SEDITLIAEQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSS 473
            ||:||.:|::|:|||||:||||||||||||||||.....|.:
  Fly   910 SEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSPTGA 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pou2f1NP_035267.2 POU 304..378 CDD:197673 69/73 (95%)
Homeodomain 406..462 CDD:459649 43/55 (78%)
POU2F1_C 476..779 CDD:437368
nubNP_001097153.1 POU 791..855 CDD:197673 61/63 (97%)
Homeodomain 884..940 CDD:459649 43/55 (78%)
Blue background indicates that the domain is not in the aligned region.

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