DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkdrej and brv2

DIOPT Version :9

Sequence 1:NP_035235.2 Gene:Pkdrej / 18766 MGIID:1338786 Length:2126 Species:Mus musculus
Sequence 2:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster


Alignment Length:594 Identity:119/594 - (20%)
Similarity:230/594 - (38%) Gaps:128/594 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse  1528 YSEIRLQGLTM--------TQEEMEQLHEDIAYVRSLSMYQPITEDKIQILRRENRIRRRSFLFL 1584
            |.:|||:.|..        |.|.:.|            .|:.|..|.:              |:.
  Fly    95 YLKIRLRSLRSELLISEGHTNEMLNQ------------KYKHIAGDLL--------------LYG 133

Mouse  1585 SYLVTHFIFLTLLLLLIFSLRHNDSFYYNQFIRHRFSVDLATV-MKLGDIYTWLHGVFLPLLHND 1648
            ||      |:.|:|:::....|.:  |||.....|...|..:| ..|..:|      |:..:|:.
  Fly   134 SY------FIALMLMVVLQEDHTN--YYNTNNMQRLFWDNTSVTFGLSQVY------FIYQVHSY 184

Mouse  1649 PNPTFLP----------------DSSSKILGLPLVRQVRARPSNKTCLLAKKFVQSSVAGEIHCH 1697
            ...|.:.                :...|| |:..:||:|                     .:.||
  Fly   185 MKITLVEAFYAQKTNGYEGWWAMEQWQKI-GVVRLRQMR---------------------PVDCH 227

Mouse  1698 PQYGIDPEDTQHYSSVWSKAGKQSTDKASHGFTYKP-----------PGKRWVYHSYGVLNTYGS 1751
            ...|....|.:.|:..|.....:..........|.|           .|....|..||.|..|..
  Fly   228 IGLGKPEWDKKTYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPE 292

Mouse  1752 -GGYVFYFFPGQQMFNSTVRLKELEGKNWLDELTWAVIVELTTLNPDTSLMCSISVVFEVSPLGV 1815
             .|||....  ....|...:::.|...:|||:.|.|:.::||..|.|.:|...|::..|.||.|:
  Fly   293 VAGYVVLMM--STKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGI 355

Mouse  1816 VNSSLSVYSFS-LADFNRKTSSE---IYLYAAILIFFCAYVVDEGYIIRQERASYIRSVYNLLNF 1876
            ....:.|.|.| |.:...:::||   :::|..::|.|...|..:  |.....|::  ..:.:::.
  Fly   356 QLPRVHVDSVSMLGNVETRSNSELLILFVYTVLVILFARGVFTK--IWHHPAAAH--EAWTMVDL 416

Mouse  1877 SLKCMFALLIVLFFWKYFLATKMVQLY-LADPEAFIPFHAVSRVDHFMRIILAFLLFLTIL---K 1937
            ::..:...|.||...:......::|:. .|....::.|....|:...:.|:..||:.:|.|   |
  Fly   417 AIYILNVFLTVLAIMRDIETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWK 481

Mouse  1938 TLRYSRFFYNVRLAQKAIQAALPGICHTALVVSIYSFMYVAFGYLVF---GQHEWNYSNMIHATQ 1999
            .|:::..|.:.   .:.:.:|...:....:::.:   :.:|.|..:.   |.:...:|:|:.:..
  Fly   482 VLQFASVFQHF---TQTLFSAWRAVASLGVIILV---VLMAIGITLAVPNGNNAVVFSHMVQSVV 540

Mouse  2000 TIFSYCVSAFQNTE----FSGNKVLGVLFLSSFMLVMICIFINLFQAVILSAYDEMKQPVYEEPS 2060
            |...|.:....:..    |.|.::||:|...:.:.::..|.:|:|.:||...::|..: :.:|.|
  Fly   541 TCMWYSMGFNGDIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFNETSR-ILKEHS 604

Mouse  2061 DEAEAVTYL 2069
            :.: ::|:|
  Fly   605 NRS-SITFL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PkdrejNP_035235.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..71
REJ 130..598 CDD:280229
PLAT_polycystin 1115..1230 CDD:238850
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1379..1431
PKD_channel 1621..2051 CDD:285288 92/473 (19%)
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 90/466 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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