Sequence 1: | XP_036016298.1 | Gene: | Pkd1 / 18763 | MGIID: | 97603 | Length: | 4316 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_609561.2 | Gene: | Pkd2 / 34651 | FlyBaseID: | FBgn0041195 | Length: | 924 | Species: | Drosophila melanogaster |
Alignment Length: | 1077 | Identity: | 211/1077 - (19%) |
---|---|---|---|
Similarity: | 335/1077 - (31%) | Gaps: | 330/1077 - (30%) |
- Green bases have known domain annotations that are detailed below.
Mouse 3304 DTTYSMGPVSSLISPGVDTVAIGLVSSVVVYPVYLAVLFLFRMSRSKVSGDQNPTPT-GQQALDV 3367
Mouse 3368 DSYLD--PSVLDSSLLTLSGLTEQAFAGQVKNDLFLEDAKRLRPGTGNNVYVAYSLVCWPSSEGT 3430
Mouse 3431 LSWPDLLSDPSVVSSTLQRLTQGRPGCMLGSEEDGASLVSPSLPAKYLSASDEDLIHQVLADGAN 3495
Mouse 3496 NLVPTQDTLLETDLLTSLSSVPGEKTETLILQTVGEERPASMGLSWEQSPVTRLSRTGLVEGFQ- 3559
Mouse 3560 -KRLLPAWCAPLAHGLSLLLVAVAVAVSGWIGASFPPSVS------------------------- 3598
Mouse 3599 -----VMWLLSSSSSFLASFLGWEPLKVL----LEALYFSLVAKRLHPDEDDTLVESPAVTPVSE 3654
Mouse 3655 RVPRVRPP-------------HGFALFL------------------------------------- 3669
Mouse 3670 AKEEARKVKRLHDMLKRLLVYMLFLLVTLLAN-YGDASCHGHAYRLQSAI--------------- 3718
Mouse 3719 -KQELDSQAFLAITRSDEFWPWMSHVFLPYVHGNQSSPELGPPRLRQVRLQEAFCPDPSS---SE 3779
Mouse 3780 HMCSAAGSLSTSDYGIGWQSVVQNGSETWAYSAPDLLGAWYWGYCAVYDSGGYIQELGLSLEESR 3844
Mouse 3845 ARLGFLQLHNWLDSRSRAVFVELTRYSPAVGLHAAVTLRLEFPVAGHALAAFSVRPFALRRLSTG 3909
Mouse 3910 LSLPLLTSVCLL--LFALYFSMAEVQTWRKDGCA---CTARPDTWARCLLVILTAATGLVRLAQL 3969
Mouse 3970 GIADRQWTHF------VQDHPR-HFTSFDQVAQLGSVARGLAASLLFLLLVKAAQQLRFVRQWSV 4027
Mouse 4028 FGKTLCRALPELMGATLGLVLLGVAYAQMAILLISSGADTLYNMARAFLVLCP---GARVPTLCP 4089
Mouse 4090 SESWYLSPLLCVGLWALRVWGALRLGAILLRWRYHALRGELYRPAWEPQDYEMVELFLRRLRLWM 4154
Mouse 4155 GFSKVKEFRHKVRFEGMDPLPSRSSRGSKSSPVVLPPSSGSEASHPSTSSSQ------PDGPSAS 4213
Mouse 4214 LSRSTLKLEPEPSRLHAVFESLLVQFDRLNQATEDVY 4250 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Pkd1 | XP_036016298.1 | LRRNT | 32..71 | CDD:214470 | |
LRR_8 | 61..127 | CDD:404697 | |||
leucine-rich repeat | 70..92 | CDD:275378 | |||
leucine-rich repeat | 93..116 | CDD:275378 | |||
PCC | 97..2731 | CDD:188093 | |||
leucine-rich repeat | 117..129 | CDD:275378 | |||
GPS | 3011..3060 | CDD:413374 | |||
PLAT_polycystin | 3118..3237 | CDD:238850 | |||
PKD_channel | 3726..4126 | CDD:400395 | 91/417 (22%) | ||
Pkd2 | NP_609561.2 | PKD_channel | 402..803 | CDD:285288 | 94/430 (22%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167841944 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3599 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.740 |