DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax3 and toy

DIOPT Version :10

Sequence 1:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus
Sequence 2:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster


Alignment Length:604 Identity:192/604 - (31%)
Similarity:269/604 - (44%) Gaps:181/604 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98
            |...:||||||::||||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||:|
  Fly    29 GHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKP 93

Mouse    99 GAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR---- 159
            .|||||||:..||| |.:||.:||||.|.:|:|||||:||.:.||:.:.:||||||:|:||    
  Fly    94 RAIGGSKPRVATTP-VVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINRVLRNLAS 157

Mouse   160 -----------SKFGK---------------------------------------GEEEEADLER 174
                       |.:.|                                       |:.:..|:::
  Fly   158 QKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPANLSGQADRDDVQK 222

Mouse   175 KEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFE 239
            :|.:.|.:.:..:.....|:..|  :.:...|.||:..|.||||.:|:||:|:.||::.||:.||
  Fly   223 RELQFSVEVSHTNSHDSTSDGNS--EHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFE 285

Mouse   240 RTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA-------------GANQLMAFNHLIP 291
            ||||||::.||.||.:..|.|||:|||||||||:||::.             |:.:....|:  |
  Fly   286 RTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANN--P 348

Mouse   292 GGFPPTAMPTLPT---------------YQLSETSYQPTSIPQAVSDP------SSTVHRPQPLP 335
            .|  .||..::.|               .:.:.::....|:|:|.:.|      ::|.|.....|
  Fly   349 SG--TTASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESP 411

Mouse   336 P--------------STVHQS------TIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNP- 379
            |              :|::.|      |:..|.:||.....||......:|...|..|....:| 
  Fly   412 PLQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPY 476

Mouse   380 ---------MNPTIGNGLSPQVMGLLTNHG--------------GVPHQPQTDYALSPLTGG--- 418
                     .||:..:...|| .|:.||..              .||.|..|. .:|.|||.   
  Fly   477 VSAHHRNTACNPSAAHQQPPQ-HGVYTNSSPMPSSNTGVISAGVSVPVQISTQ-NVSDLTGSNYW 539

Mouse   419 ---------------LEPTTTVSASCSQ--------RLEH----------MKNVDSLPTSQPYCP 450
                           |...|..:...:|        |.||          .||..||......|.
  Fly   540 PRLQXSSIFGSPLDHLSKATAAAIIAAQAAEKSHKHRKEHSIVSIHTTKRKKNPPSLKRQTTCCS 604

Mouse   451 PTYST----AGYSMDPVTG 465
            ..|..    ||..:|.|.|
  Fly   605 SRYLNMTFGAGKDVDVVIG 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 80/124 (65%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 38/55 (69%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 27/62 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 18/62 (29%)
Homeodomain 220..276 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 12/67 (18%)
Pax7 347..391 CDD:403540 11/53 (21%)
toyNP_001368990.1 PAX 29..153 CDD:128645 80/124 (65%)
COG5576 <253..368 CDD:227863 49/118 (42%)
Homeodomain 267..322 CDD:459649 34/54 (63%)
Blue background indicates that the domain is not in the aligned region.

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