DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax3 and ey

DIOPT Version :9

Sequence 1:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:772 Identity:218/772 - (28%)
Similarity:283/772 - (36%) Gaps:341/772 - (44%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG 102
            ||||||||:.|||||:..|.||||:||.|.|||.|||.|:||:|||||||.||.|||||||.|||
  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165

Mouse   103 GSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR-------- 159
            ||||: |.|.:|..||.:||||.|.:|:|||||:||::.||..:.:||||||:|:||        
  Fly   166 GSKPR-VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQ 229

Mouse   160 ------------------------------------------------------------SKFGK 164
                                                                        |..|:
  Fly   230 QSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGE 294

Mouse   165 GEEEEADLERKE----------------------------------------------------- 176
            |.|:||..|:..                                                     
  Fly   295 GSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQS 359

Mouse   177 ------------------------------AEESEKKAKHSI----------------------- 188
                                          |..|.....||:                       
  Fly   360 WPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE 424

Mouse   189 DGILSERASAPQSDE----------------GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237
            |..|.:.....||||                |:..|.:..|.||||.:|:||:||.:|::.||:.
  Fly   425 DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKE 489

Mouse   238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ------------AGA---------- 280
            ||||||||::.||.||.:..|.|||:|||||||||:||::            .||          
  Fly   490 FERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSAT 554

Mouse   281 -------NQLMAFNHLIPG--GFP----------PTAMPT---LPTYQLS-ETSYQPTSIPQAVS 322
                   |.|.|.:.|:.|  |.|          |:.:.|   .||.... ::|..||.||..  
  Fly   555 ASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHI-- 617

Mouse   323 DPSST--------------VHRPQPLPPSTVHQST--IPSNADSSSAYCLP--STRHGFS----- 364
            .||.|              |..|.||.... ||:|  |.||..:.....:|  |.|..|:     
  Fly   618 RPSCTSDNDNGRQSEDCRRVCSPCPLGVGG-HQNTHHIQSNGHAQGHALVPAISPRLNFNSGSFG 681

Mouse   365 -----------SYTDSF-----------------VPPS--------GPSN-----------PMNP 382
                       |.:||:                 .|||        .||:           ||.|
  Fly   682 AMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAP 746

Mouse   383 -----TIGNGLSPQVMGL----LTNHG----GVPHQPQTDYALSPLTGGLEPTTTVSA---SCSQ 431
                 ..|:|..|..:||    ..|.|    |..::..:.|||.|     .|..:.||   |.|.
  Fly   747 AHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPP-----PPMASSSAADSSFSA 806

Mouse   432 RLEHMKNVDSLPT-SQPYCPPTYSTA---------GYSMDPVTGYQYGQYGQSAFHY 478
            ......||....| :|..||...|:|         |:|.||::. ....|...:::|
  Fly   807 ASSASANVTPHHTIAQESCPSPCSSASHFGVAHSSGFSSDPISP-AVSSYAHMSYNY 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:278709 80/120 (67%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 39/54 (72%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 27/115 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 26/184 (14%)
Homeobox 222..275 CDD:278475 32/52 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 18/57 (32%)
Pax7 347..391 CDD:289156 18/102 (18%)
eyNP_001014693.1 PAX 98..221 CDD:128645 80/120 (67%)
Homeobox 475..527 CDD:278475 32/51 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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