DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax3 and toe

DIOPT Version :10

Sequence 1:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus
Sequence 2:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster


Alignment Length:553 Identity:160/553 - (28%)
Similarity:226/553 - (40%) Gaps:174/553 - (31%)


- Green bases have known domain annotations that are detailed below.


Mouse    27 LEVSTPL---GQGRVNQLGGVFINGRPLP------------NHI--RHKIVEMAHHGIRPCVISR 74
            |..|||:   |......|||:|..|....            |.:  :|:::|::..|:|...:::
  Fly    87 LSPSTPILTQGAPPAAALGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQ 151

Mouse    75 QLRVSHGCVSKILCRYQETGSIR-PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLL 138
            .:....|.|||:|      |::| ||.||||||| |.||.|..|||:||||||.:|:||||::|:
  Fly   152 HMLSQQGAVSKLL------GTLRPPGLIGGSKPK-VATPTVVSKIEQYKRENPTIFAWEIRERLI 209

Mouse   139 KDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLER----------------------------- 174
            .:.||...|.||||||:||||::  ..|...|:..|                             
  Fly   210 TEGVCTNATAPSVSSINRILRNR--AAERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLW 272

Mouse   175 ------------------------------------KEAEESEKKAKHSI--------------- 188
                                                .....|.....||.               
  Fly   273 GAVPLATPPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSA 337

Mouse   189 -DGILSERASAPQSD-----------------EGSDIDS-EPDLPLKRKQRRSRTTFTAEQLEEL 234
             .|.||..|.:|.|.                 ||.|.:| :.|.|   |.||:||||:.|||:||
  Fly   338 GSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDSESQDSDQP---KFRRNRTTFSPEQLDEL 399

Mouse   235 ERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 299
            |:.|:::|||.:.|||:||.|..|:|||||||||||||:||:....|.:...:.      |.|:.
  Fly   400 EKEFDKSHYPCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDS------PSTSS 458

Mouse   300 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFS 364
            ...|......:...|..:|..|:.|.|. .:.||.|.||.:.    .|..|||:           
  Fly   459 SPTPLVNPVVSPVSPIPVPVPVAVPESG-QQKQPYPYSTSNM----CNTSSSSS----------- 507

Mouse   365 SYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASC 429
                    .|.|.|.:||  |:.:|.:...:.:|.    |..:      |.......:.|.||..
  Fly   508 --------NSQPCNTINP--GSKMSSKTSSVSSNQ----HMEE------PAAAVATASPTASAPL 552

Mouse   430 SQRLEHMKNVDSLPTS--QPYCPPTYSTAGYSM 460
            |...|: ....:||.:  .|...||.|.|.:::
  Fly   553 SMGGEN-SAFRALPMTLPMPMTLPTASAAAFAL 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 57/139 (41%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 15/69 (22%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 25/161 (16%)
Homeodomain 220..276 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 11/41 (27%)
Pax7 347..391 CDD:403540 11/43 (26%)
toeNP_524041.2 HTH_ARSR 134..230 CDD:481197 50/102 (49%)
Homeodomain 385..441 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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