DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax3 and prd

DIOPT Version :10

Sequence 1:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:503 Identity:226/503 - (44%)
Similarity:281/503 - (55%) Gaps:82/503 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98
            ||||||||||||||||||||:||.||||||..||||||||||||||||||||||.||||||||||
  Fly    27 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRP 91

Mouse    99 GAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFG 163
            |.||||||: :.||::|.:||||||.:|||||||||:||:::.||||:|.||||:|||::|    
  Fly    92 GVIGGSKPR-IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR---- 151

Mouse   164 KGEEEEADLERKEAEESE----KKAKHSIDGILS---ERASAPQSDEGSDIDSEPDLPLKRKQRR 221
             |.:...|.:...|..|.    .||..|....:|   .....|..::.||.:|||.:.|||||||
  Fly   152 -GRDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRR 215

Mouse   222 SRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAF 286
            .||||:|.||:|||||||||.|||||||||||||..|||||:||||||||||.|||         
  Fly   216 CRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ--------- 271

Mouse   287 NHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSD-PSST--VHRPQPLPPSTVHQSTIP--- 345
            :..:.||.|..|..::.....|      :|:|..||. ||..  ...|..|.|:||:|....   
  Fly   272 HTSVSGGAPGGAAASVSHVAAS------SSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYG 330

Mouse   346 --SNADSSSAYCL------------PSTRHGF---SSYTDSFVPP--SGPSNPMNPTIGNGLSPQ 391
              :|...|:|..:            |...|.|   |:.|.|::.|  :|.:.|....|.:....|
  Fly   331 SHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQ 395

Mouse   392 ---VMGLLT-NHGGVPHQPQTDYALSPLTGGLEPT-TTVSASCSQRLEHMKNVDSLPTSQPYCPP 451
               |.|..| .|..:|.....:.::|...|.|.|| .::||..|.     ..|.|...:.....|
  Fly   396 LGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSG-----AGVTSSSGANSGADP 455

Mouse   452 TYSTAG--------------YSMDPVTGYQ---YGQYGQSAFHYLKPD 482
            :.|.|.              .|:|.:...|   ||  |.|:...|:|:
  Fly   456 SQSLANASAGSEELSAALKVESVDLIAASQSQLYG--GWSSMQALRPN 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 99/124 (80%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 50/55 (91%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 31/47 (66%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 25/69 (36%)
Homeodomain 220..276 CDD:459649 46/55 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 13/49 (27%)
Pax7 347..391 CDD:403540 13/60 (22%)
prdNP_723721.1 PAX 27..154 CDD:238076 101/132 (77%)
Homeodomain 214..270 CDD:459649 46/55 (84%)
Blue background indicates that the domain is not in the aligned region.

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