DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax3 and Pph13

DIOPT Version :10

Sequence 1:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus
Sequence 2:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster


Alignment Length:288 Identity:89/288 - (30%)
Similarity:124/288 - (43%) Gaps:68/288 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
            :||||||.||||...||:||||||:||||||::.|||||.|..||||||||||.||||:||||..
  Fly     6 MKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70

Mouse   280 ANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTI 344
            ...|       .|.:...|:..       :.||..:::   :....|.:.....|.|.|..||: 
  Fly    71 IGGL-------GGDYKEGALDL-------DVSYDDSAV---LGQLDSALGGGGTLLPDTPPQSS- 117

Mouse   345 PSNADSSSAYCLPSTRHGFSSYTDSFVPPS--GPSNPMNPTI--------GNGLS-------PQV 392
             ::.|:...          :||....:.||  .|:..:|..|        |:|||       ||.
  Fly   118 -NSLDNELK----------ASYGTGAMSPSRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQT 171

Mouse   393 MG----LLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYCPPTY 453
            ..    .:.:...:...|...:|..|:..|     :.|....|:.:|.:.     ...|...|..
  Fly   172 QAQTHPQMDSDNQLQQHPPQQHASDPIHAG-----SSSHHQQQQQQHQQE-----QHNPQLHPGL 226

Mouse   454 S-TAGYSMDPVTGYQYGQYGQSAFHYLK 480
            . .|..|:|...       |.||:..:|
  Fly   227 EFAASLSLDMTD-------GSSAYDEMK 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 10/12 (83%)
Homeodomain 220..276 CDD:459649 41/55 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 9/41 (22%)
Pax7 347..391 CDD:403540 12/60 (20%)
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 41/55 (75%)
Blue background indicates that the domain is not in the aligned region.

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