DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pax1 and ey

DIOPT Version :10

Sequence 1:XP_006498974.1 Gene:Pax1 / 18503 MGIID:97485 Length:534 Species:Mus musculus
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:398 Identity:148/398 - (37%)
Similarity:178/398 - (44%) Gaps:128/398 - (32%)


- Green bases have known domain annotations that are detailed below.


Mouse   137 RALPLCLSGGGGARALPDCAG-PSPRRSG--ARQLAGPRAM-------------EQTYGEVNQLG 185
            |.|| ||...||: .|...|| |||....  |...:.|.:.             ::.:..|||||
  Fly    43 RNLP-CLGTAGGS-GLGGIAGKPSPTMEAVEASTASHPHSTSSYFATTYYHLTDDECHSGVNQLG 105

Mouse   186 GVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR 250
            ||||.|||||::.|.:|||||..|.|||||||.|:||:|||||||.||.|||||.|.||||||||
  Fly   106 GVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIGGSKPR 170

Mouse   251 VTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEA 315
            |.|..||..|..||:..|.|||||||||||.:.||...|:||||||:|:|||    ||      |
  Fly   171 VATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRN----LA------A 225

Mouse   316 SKQPPPQPALPYNHIYQYPYPSPVSPTGTKMGTHPGVPGSAGH-VSIPRSWPSAHSVSNILGIRT 379
            .|:             |....|..|.|            |||: :|...|.....:|||:     
  Fly   226 QKE-------------QQSTGSGSSST------------SAGNSISAKVSVSIGGNVSNV----- 260

Mouse   380 FMEQTGALAGSEGAAYSPKMEDWAGVNRAAFPTSPAVNGLEKPALEADIKYTQSASSLSAVGGFL 444
                   .:||.|...|                            ..|:..|.:..:.|..||  
  Fly   261 -------ASGSRGTLSS----------------------------STDLMQTATPLNSSESGG-- 288

Mouse   445 PACAYPASN------QHGVY-------SAPAAGYLSPGPPWPPAQAPPL---TPHGAGV------ 487
                  |||      |..:|       :..|||   || |..||:|.||   :|:..|.      
  Fly   289 ------ASNSGEGSEQEAIYEKLRLLNTQHAAG---PG-PLEPARAAPLVGQSPNHLGTRSSHPQ 343

Mouse   488 AVHGGELA 495
            .|||...|
  Fly   344 LVHGNHQA 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pax1XP_006498974.1 PAX 177..304 CDD:238076 86/126 (68%)
eyNP_001014693.1 PAX 98..221 CDD:128645 83/122 (68%)
Homeodomain 473..528 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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