DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Osmr and Dscam1

DIOPT Version :9

Sequence 1:NP_035149.2 Gene:Osmr / 18414 MGIID:1330819 Length:971 Species:Mus musculus
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:1059 Identity:199/1059 - (18%)
Similarity:331/1059 - (31%) Gaps:396/1059 - (37%)


- Green bases have known domain annotations that are detailed below.


Mouse    43 LKLQEVNLEWTVPALTHEELNMIFQIEISRLNISNTIWVENYSTTVKREEAVRWNWT-----SDI 102
            |::|.:.|...|| ..:|:|          :|:.::|  :.:....|.:..::.:|:     .|.
  Fly   614 LEVQVMVLPQIVP-FAYEDL----------INMGDSI--DLFCQIQKGDRPIKVHWSFERSAGDY 665

Mouse   103 PLECVKHFIRIRALVDDTK--SLPQSSWGNW------SSWKEVNAKVSVE-----PDKSLIFPKD 154
            ..:.|:..:|...:.:.|.  |:|.:|..:.      :|.|......||:     |.:.::.|.|
  Fly   666 GFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTD 730

Mouse   155 KVLEEGSNVTI-CLMYGQNVYNVSCK--LQDEPIHGEQLDSHVSLLKLNNVVFLSDTGT----NI 212
            |...:||:..: |...|.....|:.|  :.|.|  ||..|    |.|.:|:  ..:.||    ||
  Fly   731 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP--GEYKD----LKKSDNI--RVEEGTLHVDNI 787

Mouse   213 N--------CQATKGPKRIFGTVLFVS---------KVLE------EPKNVSCETRDFKTLDCSW 254
            .        |:|..|.......|:.:|         |:..      ||..:.||.:..|.:...|
  Fly   788 QKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILW 852

Mouse   255 -------EPGVDTTLTWRKQRFQNYTLCESFSKRCEVSNYRNSYTWQITEGSQEMYNFTLTAENQ 312
                   :|..|...|.|::......:.....||.|.|               :...||..|.|.
  Fly   853 NMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERS---------------DSALFTCVATNA 902

Mouse   313 LRKRSVNINFNLTHRVHPKAPQDVTLKII--GATKANMTWKVHSHGNN----YTL-LCQVKLQYG 370
            ......:||. :...| |:.|  ..||::  ......::|.....||:    |.: ..:.:..:.
  Fly   903 FGSDDASINM-IVQEV-PEMP--YALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWS 963

Mouse   371 E----VIHEHNVSVHMSANYLFSDLDPDTKYKAFVRCASANHFWKWSDWTQKEFSTPETAPS--- 428
            |    ::..|.....:      ..|.|.|.|.  :|..:.|..............|.|.|||   
  Fly   964 EIDRVIVPGHTTEAQV------QKLSPATTYN--IRIVAENAIGTSQSSEAVTIITAEEAPSGKP 1020

Mouse   429 QALDVWRQVWSENGRRIVTLFWKPLLKSQANGKIISY------------------NIVVENEAKP 475
            |.:.|  :..::...|:.   |||..:::.||:|:.|                  |.:.| |.| 
  Fly  1021 QNIKV--EPVNQTTMRVT---WKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITE-EGK- 1078

Mouse   476 TESEHYCVWAPALSTNLSLDLQ------PYKIRITANNSMGASPESLMVLSNDSGHEEVKEKTIK 534
               ||            :|:||      .|.:.|.|.|.:||.|.|          ||.|:.|.:
  Fly  1079 ---EH------------NLELQNLRVYTQYSVVIQAFNKIGAGPLS----------EEEKQFTAE 1118

Mouse   535 G--------------IKDAFNISW-----EPVSGDTMGYVVDWCAHSQDQRCDLQWKNLGPNTTS 580
            |              ......:.|     |..:|....|.|.:....       :|.:.......
  Fly  1119 GTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSD-------EWYDETKRHYK 1176

Mouse   581 TTITSDDFKPGVRYNFRIFERSVEHKARLVEKQRGYTQEL------------APL---VNPKVEI 630
            .|.:||....|::                  |...||.::            .|:   ..|.|  
  Fly  1177 KTASSDTVLHGLK------------------KYTNYTMQVLATTAGGDGVRSVPIHCQTEPDV-- 1221

Mouse   631 PYSTPNSFVLRWPDYDSDFQAGFIKGYLVYVKSKEMQCNQPWERTLLPDNSVLCKYDI----NGS 691
                        |:..:|.:| .:.|....:.|        |.....| |.::.:|.:    .|:
  Fly  1222 ------------PEAPTDVKA-LVMGNAAILVS--------WRPPAQP-NGIITQYTVYSKAEGA 1264

Mouse   692 ETKTLT-----------VENLQPESLYEFFVTPYTSAGPGP--------------------NETF 725
            ||:|.|           ...|:....|||:||..|:.|.|.                    ::||
  Fly  1265 ETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTF 1329

Mouse   726 TKVTTPDARSHMLLQIILPMTLCVLLSIIVCYWKSQWVKEKCYPDIPNPYKSSILSLIKSKKNPH 790
            |.....||:        :|   |:.:.                  .|.|..:..:..::...|..
  Fly  1330 TATFKEDAK--------MP---CLAVG------------------APQPEITWKIKGVEFSANDR 1365

Mouse   791 LIMNVKDCIPD---VLEVINKAEGSKTQCVGSGKLHIEDVPTKPPIVPTEKDSSGPVPCIFFENF 852
            :.:     :||   :::.:|:.:.....|      |.|:...|                      
  Fly  1366 MRV-----LPDGSLLIKSVNRQDAGDYSC------HAENSIAK---------------------- 1397

Mouse   853 TYDQSAFDSGSHGLIPGPLKDTAHQLGLLAPPNKFQNVLKNDYMKPLVESPTEETSLIYVSQLAS 917
                   ||.:|.||            :||||           ..|.|......|..:.|.  ..
  Fly  1398 -------DSITHKLI------------VLAPP-----------QSPHVTLSATTTDALTVK--LK 1430

Mouse   918 PMCGDKDTLATEPPVPVHG 936
            |..||        ..|:||
  Fly  1431 PHEGD--------TAPLHG 1441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OsmrNP_035149.2 LIFR_D2 30..137 CDD:375455 20/106 (19%)
fn3 332..413 CDD:394996 15/91 (16%)
WSXWS motif. /evidence=ECO:0000250 412..416 0/3 (0%)
FN3 437..512 CDD:214495 22/98 (22%)
FN3 622..730 CDD:238020 29/145 (20%)
Box 1 motif. /evidence=ECO:0000250 767..775 1/7 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 949..971
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352 1/3 (33%)
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 11/72 (15%)
IGc2 735..804 CDD:197706 21/76 (28%)
I-set 819..914 CDD:254352 21/110 (19%)
Ig 833..921 CDD:299845 22/104 (21%)
FN3 918..1011 CDD:238020 16/102 (16%)
FN3 1018..1116 CDD:238020 30/129 (23%)
FN3 1124..1217 CDD:238020 14/117 (12%)
FN3 1222..1312 CDD:238020 23/99 (23%)
Ig 1339..1406 CDD:299845 17/139 (12%)
FN3 1409..1499 CDD:238020 12/54 (22%)
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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