DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ntn3 and wb

DIOPT Version :10

Sequence 1:NP_035077.1 Gene:Ntn3 / 18209 MGIID:1341188 Length:580 Species:Mus musculus
Sequence 2:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster


Alignment Length:498 Identity:147/498 - (29%)
Similarity:207/498 - (41%) Gaps:95/498 - (19%)


- Green bases have known domain annotations that are detailed below.


Mouse     8 LLLTAGTLSAALSPGLPASADPCYDEAREPRSCIPGLVNAALGREVLASSTCGRS-ANRVCDSSD 71
            ||.|....|::.|.||                 .|.|.|.....::..::|||:: |...|....
  Fly   138 LLKTEDVYSSSFSGGL-----------------YPPLFNVVPRAQISVNATCGQNGAEEYCKQVG 185

Mouse    72 PQ-----RAHSAD---------LLTSAPGTASPL-----CWRSDLLQ---QAPFNVTLTVPLGKA 114
            .:     .|||:|         |::|..|:.|..     .|:|..||   |..: ||:.:.|.:.
  Fly   186 AKPCGICNAHSSDRAKQRSIQSLISSGSGSGSGSGFEEGWWQSPTLQGGRQFEY-VTILLDLKQT 249

Mouse   115 FELVFVSLRFCSAP-PTSVALLKSQD--HGRSWVPLGFFSSSCTLDYGRLPAPADGPSGP----- 171
            |::..|.|:..::| |.|..|.||.|  :...|...|...:.|...:.     ..|.:|.     
  Fly   250 FQIFSVWLKSANSPRPASWILEKSLDGINFEPWQYFGLSDADCQRRWN-----LSGQNGKYVFQN 309

Mouse   172 GPEALC---FPAPQAQPDGGGLLAFSVQDGSPQGLDLDNSPVLQDWVTATDIRIVLT---RPAIQ 230
            ..|.:|   |..|  .|...|:|..|:....|..  .|.||.|..::|...|||.|.   ..|.|
  Fly   310 DTEIICSTQFSKP--GPLENGVLHASLLKNRPGA--TDQSPELMKFITTRYIRIRLQGMHSTANQ 370

Mouse   231 GDTRDGGVTVP----YS-YSATELQVGGRCKCNGHASRCLLDTHGHLV-CDCQHGTEGPDCSRCK 289
            .::.|..:..|    :| ||.::|:|..|..|||||:|........|: |.|||.|.|..|.:|.
  Fly   371 DNSLDWLLDSPSLEKHSFYSLSQLKVSARLDCNGHANRSHESPDDPLMQCICQHNTCGAQCEQCC 435

Mouse   290 PFYCDRPWQRATGQEAHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCR 354
            |.:.|||:|  .|.|   |..|.|.|||..|.::..|.:       |:|.:|.:||||..|.:|.
  Fly   436 PLFQDRPYQ--MGGE---CEICQCYGHAESCTYDPFLDK-------GICQSCSNNTAGIECEFCE 488

Mouse   355 EGFYRDPGRVLSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVA 419
            .||||:....|:|  .|..|.|:|..:.| .|....|.|.|.:|..|..|..||||:........
  Fly   489 MGFYRELDAPLTD--PCLPCSCNPARSTG-GCQSDGGSCNCLEGFQGKNCEECAPGYYGDDCKRC 550

Mouse   420 PCVKTPVPGPTEESS-------PVEPQDCESHCRPARGSYRIS 455
            .|.:....|.|...|       .||...| |.|.|  |.:.:|
  Fly   551 ECDERGSLGSTGSCSGVCQCKLNVEGSTC-SECAP--GYFDLS 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ntn3NP_035077.1 Laminin_N 34..253 CDD:470680 66/260 (25%)
EGF_Lam 254..299 CDD:238012 20/45 (44%)
Laminin_EGF 311..362 CDD:395007 20/50 (40%)
EGF_Lam 373..422 CDD:238012 15/48 (31%)
NTR_netrin-1_like 456..562 CDD:239634 147/498 (30%)
Cell attachment site, atypical. /evidence=ECO:0000255 500..502
wbNP_723870.1 Laminin_N 153..398 CDD:459653 67/271 (25%)
EGF_Lam 401..450 CDD:238012 22/53 (42%)
EGF_Lam 505..552 CDD:238012 15/47 (32%)
Laminin_EGF 550..597 CDD:395007 12/44 (27%)
Laminin_B 660..813 CDD:459652
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:395007
Laminin_EGF 974..1018 CDD:395007
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:395007
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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