DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ubc-17 and Bruce

DIOPT Version :9

Sequence 1:NP_509188.3 Gene:ubc-17 / 181979 WormBaseID:WBGene00006712 Length:728 Species:Caenorhabditis elegans
Sequence 2:NP_001262460.1 Gene:Bruce / 41260 FlyBaseID:FBgn0266717 Length:4976 Species:Drosophila melanogaster


Alignment Length:647 Identity:209/647 - (32%)
Similarity:306/647 - (47%) Gaps:125/647 - (19%)


- Green bases have known domain annotations that are detailed below.


 Worm    96 RKQFVECGVIHHLLELIG-----------ETAISDFSASSRSADE--------------QKRRAR 135
            |:..:|.|.:|.:|..:|           ...||:.|.|..|:..              .|..|.
  Fly  4273 RRVVIEVGAMHLVLNCLGIFSHQSHNNRIGAPISEPSPSGTSSGSGTIGNGSGNGSVSGTKTNAP 4337

 Worm   136 RNSSASL-----SH----KGTGYGTGSTRSRWDIERTVEEKLIREEHLTWLLSILNSF------- 184
            ..::.|.     ||    ||||:|||||...|::|:.:..:...|||:|.||.:|.|:       
  Fly  4338 EEATPSATSDDKSHMYWAKGTGFGTGSTTQSWNVEQALLRQKSEEEHVTVLLLVLASYINPGDCI 4402

 Worm   185 ---MLGWPTTDNLKTKPEELV----------HMTEIAIKLIADSSVLSILEYNLRNDSFFDVSEH 236
               |.|           |:::          .:..|...|:..|.::..|...|||||..|::.|
  Fly  4403 PSEMCG-----------EDILAYHDVRDVTGELPPIFQTLLQQSCLIPALSSYLRNDSVLDITRH 4456

 Worm   237 IEIYQALLETAASMA------------------ATPGLVPFLVRPYTSSAKSIAKELIPRFKENI 283
            |.:|:|:|:...:::                  :||.:|..|....| ...:.||.|....|.||
  Fly  4457 IPLYRAILKLLRALSLSKMLVSLLQPSASGSGDSTPPIVELLTSMKT-CVDTYAKRLKVNKKSNI 4520

 Worm   284 LSIQARWGGTLEETNFRMAEFTAK-VTLLSDYVINAARAYEQTLPPEQRIQTATHRRPSHSGLHS 347
                   .|...:..|.:.:...: :.||...:...:...::|...:..|..          ||:
  Fly  4521 -------KGQTHQLTFNIDDGDDEGLALLIPDIHETSVLVQKTTDADALINM----------LHT 4568

 Worm   348 KMQG-------PKDDETIYKNKMQELQLQTAKFI----GDFGKLCVPYVFRKEAKNI-NPFSPHL 400
            ...|       .|..|..|...|::.|..|...|    .:..:..|.:.|.|..:.. :.:.|  
  Fly  4569 NEDGSAQLEPQSKSIEQRYLELMKKRQFDTFDMIVESDNNSFRFVVSHHFEKMVRLAGDRYHP-- 4631

 Worm   401 RDRTKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGY 465
             .|.||:|:|..:::.:|||:.|:|::|..|..|:||:||||:||.|||||||.||||:|||..|
  Fly  4632 -SRVKRLAQEAVTLSTSLPLSFSSSVFVRCDTDRLDIMKVLITGPADTPYANGCFEFDVFFPPDY 4695

 Worm   466 PFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPY-CSLMQVLVSIQGLIFV 529
            |..|......|||..:||||||||||||:|||:|.||.||||||||.. .|.:|||||||.||.|
  Fly  4696 PNQPMLINLETTGRHSVRFNPNLYNDGKVCLSVLNTWHGRPEEKWNAQTSSFLQVLVSIQSLILV 4760

 Worm   530 KDPYFNEPGFERYQGTDRGDEYSRKYNLQIEHATLNYAIREQLKKPSEHFKEVIEKHLWLKREAI 594
            .:||||||||||.:|:..|...||:||..|..|.:.:|:.||::.||:.||:||.||.|||||.|
  Fly  4761 PEPYFNEPGFERSRGSPSGTNSSREYNSNIYQACVRWAMLEQIRSPSQCFKDVIHKHFWLKREEI 4825

 Worm   595 LKQAQAWIDNVSNDFGDDKMSKRKDVFAFETGFNPATQERVIHNLIQELQAMQSPFAKEEAE 656
            ..|.:.||:.:......::.|:       ...||.....|...:|.:||..::.|...|:.:
  Fly  4826 CAQIEGWIEELGKPQYTERASR-------TISFNSMVLRRHYRHLREELSKLKPPRGLEDLD 4880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ubc-17NP_509188.3 UBCc 406..>527 CDD:214562 73/121 (60%)
BruceNP_001262460.1 BIR 251..321 CDD:279047
DUF3643 3539..3664 CDD:289152
UQ_con 4636..4790 CDD:278603 92/153 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163327
Domainoid 1 1.000 193 1.000 Domainoid score I1866
eggNOG 1 0.900 - - E2759_KOG0895
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto20520
orthoMCL 1 0.900 - - OOG6_104392
Panther 1 1.100 - - LDO PTHR46116
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2875
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.770

Return to query results.
Submit another query.