DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nr1i2 and Hr96

DIOPT Version :9

Sequence 1:NP_035066.1 Gene:Nr1i2 / 18171 MGIID:1337040 Length:431 Species:Mus musculus
Sequence 2:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster


Alignment Length:721 Identity:143/721 - (19%)
Similarity:212/721 - (29%) Gaps:341/721 - (47%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 CRVCGDKANGYHFNVMTCEGCKGFFRRAMKRNVRLRCPFRKGTCEITRKTRRQCQACRLRKCLES 102
            |.||||||.||:||.:|||.||.||||......:..|||.: .|:||..|||.||.|||||||:.
  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQ-NCDITVVTRRFCQKCRLRKCLDI 70

Mouse   103 GMKKEMIMS--DAAVEQRRALIKRKKREKIE---------------------------------- 131
            |||.|.|||  |..:::|:....|.||..:|                                  
  Fly    71 GMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQ 135

Mouse   132 -------------------APPPGGQ----GLTEEQ-------------QALIQELMDAQMQTFD 160
                               |..||.|    .:|.|:             || |..||..|.:...
  Fly   136 DSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQA-INRLMRTQKEAIS 199

Mouse   161 T-------------TFSHFKDFR----------------------------------LPAVFHSG 178
            .             ..||..|:.                                  :..:..|.
  Fly   200 VMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSP 264

Mouse   179 CELPEFLQASLLEDP-----------------------------ATWSQIMKDRVPM-------- 206
            .::.||:| :|:..|                             |..:|...||.|:        
  Fly   265 ADVVEFMQ-NLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVK 328

Mouse   207 ---------------------------KISLQLR----GEDGSI--------------------- 219
                                       .:.||..    ||..|.                     
  Fly   329 PAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFM 393

Mouse   220 ---WNYQPPSKSDG---------KEIIPL------------------------------------ 236
               :|.:|...||.         .|:|.:                                    
  Fly   394 QTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAANN 458

Mouse   237 -LPHL---------------------------------------ADVSTYM-------------- 247
             .|||                                       .|:|..|              
  Fly   459 SQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDDTRHN 523

Mouse   248 -------------FKGVINFAKVISYFRDLPIEDQISLLKGATFEMCILRFNTMFDTETGTWECG 299
                         .|.:|..||.|:.|||:..|||::||||...||.|:|...::|.:...|:..
  Fly   524 PKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVP 588

Mouse   300 RLAYCFEDPNGGFQKLLL--------DPLMKFHCML-KKLQLHKEEYVLMQAISLFSPDRPGVVQ 355
            ..    ::..|..:..||        :...||.... :|.::.:...::|.||.||:..|..|:.
  Fly   589 HT----KENMGNIRTDLLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIH 649

Mouse   356 RSVVDQLQERFALTLKAYIECSRPYPAHRFLFLKIMAVLTELRSINAQQTQQLLRIQDSHPFATP 420
            :.|:...|..:...|:.|:|........|..|:|::..::::..:|.......|.:..|.  ..|
  Fly   650 KDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIINVYLNVNPSQ--VEP 712

Mouse   421 LMQELF 426
            |::|:|
  Fly   713 LLREIF 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nr1i2NP_035066.1 NR_DBD_like 37..124 CDD:383039 47/87 (54%)
Bipartite nuclear localization signal. /evidence=ECO:0000250 63..89 9/25 (36%)
Hinge 105..142 15/95 (16%)
NR_LBD 140..425 CDD:386099 86/557 (15%)
Hyperforin binding, agonist. /evidence=ECO:0000250|UniProtKB:O75469 282..285 1/2 (50%)
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 49/91 (54%)
NR_LBD 462..>573 CDD:299703 23/110 (21%)
NR_LBD_F1 523..702 CDD:132727 43/182 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847978
Domainoid 1 1.000 99 1.000 Domainoid score I7064
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40757
Inparanoid 1 1.050 171 1.000 Inparanoid score I4095
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153746at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6384
SonicParanoid 1 1.000 - - X988
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.030

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