DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment syg-2 and side-III

DIOPT Version :9

Sequence 1:NP_001309674.1 Gene:syg-2 / 181561 WormBaseID:WBGene00007750 Length:1230 Species:Caenorhabditis elegans
Sequence 2:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster


Alignment Length:881 Identity:174/881 - (19%)
Similarity:314/881 - (35%) Gaps:246/881 - (27%)


- Green bases have known domain annotations that are detailed below.


 Worm   398 ELSVEAHQINVE----CMATNPEGSSAKQHVIK--IIAPPKAPIITGLEDR-------KFFEGDI 449
            :|||:..|::.|    | ..:.:.|..:.|.|.  :|.||...::.....|       ...|||.
  Fly   132 KLSVDNIQLDDEGVYRC-RVDFQNSPTRNHRINLTVIVPPHQILVYDASGRDVAGAVGPLLEGDN 195

 Worm   450 VNVTCEAQGGNPLAELSWYRGSEKHLVKGRKKMKWSQVNGAHNEVAGFSSYSTLALRVDRTMNTQ 514
            :.:|||.:||.|...::|..|: :.|..|........|.....|||          ::.|:....
  Fly   196 IVLTCEVRGGRPEPTVTWMNGT-RTLEAGSGVSMGRHVTVNRLEVA----------QISRSALNN 249

 Worm   515 RLKCEATNAALDEPLIESQYLSVYYPPRRVLIRPADSGDQRLLVGKS---ARLVCGTLSSNPAAH 576
            ..:|:|:|..|..|:..|..:.:...|..|.:      ..:|.|..|   ..|.|....|.|...
  Fly   250 TYRCQASNTKLVAPVERSIRIEMLLKPTSVNL------TNKLKVFASNTQYNLTCIVAGSVPDTE 308

 Worm   577 ISWQFSRATDDNKVHLGDVSLNETTRDNGFNVENVLSFTPTEEYDGTVVHCIANHPEWKHS-VNT 640
            |.|     |.:|:..  ...|..|::.|| .|.:.|:|.|..|.|||::.|..::|..::| :..
  Fly   309 IKW-----TQNNRPF--KRGLLSTSQSNG-RVISTLTFYPQPEDDGTMLKCEGSNPRLQNSAIED 365

 Worm   641 SFPLNVMYPPKMLVNDPVTV---VMSEGDSFKENLTVRGNPAISLWQWRKNGVPFDHTIGRVFAR 702
            |..:||:|||::.::...|:   .:.|||.......::.||......|..:|.|....:    :.
  Fly   366 SLMMNVIYPPQVTLSLGSTLRPDDIKEGDDVYFECHIKSNPKEHRIMWSHDGQPVTQNV----SW 426

 Worm   703 GAVLSGKQLL-----STDAGVYTLTATNSVGST-NITIKLAVEYSARITSISTPVIAAT-GDTVL 760
            |.::|.:.|:     ...:|.|..:|.|..|.| :..:.|.:.|:...:|.|..||.|: .:.|.
  Fly   427 GIIISTRSLVLQRVGRIHSGFYACSAANDRGETQSAPVNLRIRYAPVCSSSSITVIGASLEEDVP 491

 Worm   761 LECEADGEPSKANMIHWYKNGEILAAQHRGHKKAILRLNATEQQSGEYTCKADNGIGVPAEGQTF 825
            :.|..:.:|.:.: ..|                       |...|||:                 
  Fly   492 IPCRVNSDPPEID-FEW-----------------------TFSTSGEH----------------- 515

 Worm   826 LLVNSAPRVLPVARYAKTAGILGGVAKARCKVYAVPTVEFVWEKDEQLIKKNSSKYSIV-NTQID 889
                                            :.||:..:...:|..:...:..:.::| :.:..
  Fly   516 --------------------------------FEVPSGHYATIQDPTMTTTSDVRRTVVESNETH 548

 Worm   890 YSTYESTLWIKNIVPDDYTKK-------VKCIARNSFG--TDHLSIPIIPPTHPDEPFNLTMTNS 945
            :.:|..|  :..::   ||.|       :.|..||:.|  :|.....::|...|....|.|:...
  Fly   549 FESYVET--VSELI---YTPKGERDYGTLACYGRNAIGKQSDPCVFQVVPAAKPGALRNCTLRPY 608

 Worm   946 TLNTISVAWEPRFDGGSDQIFEVKYRRQNDDLIHL--VNTTHTNLRLSGLATANTYFFQIRSINA 1008
            .:.:.|:....:....::||...:|.|...:..|:  |...|                     |:
  Fly   609 VVTSASLNSSNQTTMHANQILPTQYGRHESNYPHMEYVRERH---------------------NS 652

 Worm  1009 RGFASSWTSPVI----FATLNEDG---VNVAMIRNEKL---------KLTTWIPYILIFIVLFML 1057
            .|..::.|:|..    .|..|..|   ...|...|::|         |.|::.|...:..:    
  Fly   653 SGGNNNGTAPAAGRNNVANKNMRGRTSAGQAKSNNKQLTQQQLQRLKKRTSFTPSQTLAAI---- 713

 Worm  1058 LNVVICCFVCNRTKKRK--------LREKTEMARTAINGGDVRQVQMYGTMMGNDGMSRRDIDDR 1114
                      .|.::||        |:::...|....:|||.:.          ||...:....|
  Fly   714 ----------ERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKP----------DGSPAKSSKQR 758

 Worm  1115 PEMSEDEHSVRTMIEVSPNGYMQPIEPMLYESTGL-------LEYDYQTRSYM--GSSQGTRSMT 1170
            ...:..:..::...:     :.|..:..|:.:|.:       .|.:..| |::  |||..:||  
  Fly   759 MRRASRDPQIQQQQQ-----HQQQQQHQLHAATSITSSQRKQAESNLST-SHLGKGSSSSSRS-- 815

 Worm  1171 YANVPYPEPPQPSYHSNWNSLQRQSNNNTSPQHHLS 1206
                      :.|..||.||   :|||...|..:.:
  Fly   816 ----------RRSSSSNINS---KSNNGKQPAKYFN 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
syg-2NP_001309674.1 IG_like 25..105 CDD:214653
Ig 33..122 CDD:299845
Ig 147..228 CDD:299845
IGc2 248..313 CDD:197706
Ig 450..537 CDD:299845 21/86 (24%)
Ig 559..632 CDD:299845 22/75 (29%)
I-set 657..738 CDD:254352 19/89 (21%)
Ig 665..738 CDD:299845 17/78 (22%)
IG_like 748..828 CDD:214653 12/80 (15%)
IGc2 756..817 CDD:197706 8/60 (13%)
Ig 845..922 CDD:299845 13/86 (15%)
FN3 934..1023 CDD:238020 15/94 (16%)
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 9/34 (26%)
V-set 59..166 CDD:284989 9/34 (26%)
ig 190..268 CDD:278476 23/88 (26%)
IG_like 192..259 CDD:214653 21/77 (27%)
Ig 296..361 CDD:299845 22/72 (31%)
IG_like 391..468 CDD:214653 18/80 (23%)
IGc2 392..454 CDD:197706 14/65 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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