Sequence 1: | NP_510425.2 | Gene: | let-4 / 181554 | WormBaseID: | WBGene00002282 | Length: | 773 | Species: | Caenorhabditis elegans |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001369108.1 | Gene: | Fili / 5740472 | FlyBaseID: | FBgn0085397 | Length: | 789 | Species: | Drosophila melanogaster |
Alignment Length: | 391 | Identity: | 115/391 - (29%) |
---|---|---|---|
Similarity: | 190/391 - (48%) | Gaps: | 22/391 - (5%) |
- Green bases have known domain annotations that are detailed below.
Worm 3 LLLCLLLFSTLLINSTNA-CPGVITQACFC--SEVHSGIVLDCSNSSASGILQIIRTNQAQVGLI 64
Worm 65 QSLTMNQAELVELPPNFFSGLFIRRLDLSQNKIKKIDDAAFAGINPVLEEVVLNHNLIEKVPAAA 129
Worm 130 LAGLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQNVKNSIQTINLGHN 194
Worm 195 NMTAVPSSAIRGLKQLQSLHLHKNRIEQLDALNFLNLPVLNLLNLAGNQIHELNRQAFLNVPSLR 259
Worm 260 YLYLSGNKITKLTAYQFQTFEQLEMLDLTNNEIGAIPANSLSGLKQLRQLYLAH-NKISNISSNA 323
Worm 324 FT-NSSIVVLVLSSN-ELKTLTAGIISGLPNLQQVSFRDNQIKTINRNAFYDAASLVMLDLAKNQ 386
Worm 387 L 387 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
let-4 | NP_510425.2 | leucine-rich repeat | 66..86 | CDD:275380 | 5/19 (26%) |
LRR_RI | <71..275 | CDD:238064 | 64/203 (32%) | ||
LRR_8 | 88..146 | CDD:290566 | 23/57 (40%) | ||
leucine-rich repeat | 88..111 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 112..135 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 136..160 | CDD:275380 | 10/23 (43%) | ||
LRR_8 | 156..220 | CDD:290566 | 17/63 (27%) | ||
leucine-rich repeat | 161..184 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 186..209 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 210..257 | CDD:275380 | 15/46 (33%) | ||
LRR_RI | <250..411 | CDD:238064 | 42/141 (30%) | ||
LRR_8 | 256..316 | CDD:290566 | 19/60 (32%) | ||
leucine-rich repeat | 258..281 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 282..305 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 306..328 | CDD:275380 | 9/23 (39%) | ||
LRR_8 | 327..387 | CDD:290566 | 15/60 (25%) | ||
leucine-rich repeat | 329..350 | CDD:275380 | 4/21 (19%) | ||
leucine-rich repeat | 353..400 | CDD:275380 | 9/35 (26%) | ||
leucine-rich repeat | 356..376 | CDD:275380 | 4/19 (21%) | ||
leucine-rich repeat | 401..419 | CDD:275380 | |||
Fili | NP_001369108.1 | leucine-rich repeat | 75..97 | CDD:275378 | 5/25 (20%) |
leucine-rich repeat | 98..121 | CDD:275380 | 10/25 (40%) | ||
LRR_8 | 120..180 | CDD:404697 | 21/60 (35%) | ||
leucine-rich repeat | 122..145 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 146..169 | CDD:275380 | 10/23 (43%) | ||
LRR | <161..>354 | CDD:227223 | 56/193 (29%) | ||
leucine-rich repeat | 170..193 | CDD:275380 | 6/23 (26%) | ||
leucine-rich repeat | 194..217 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 218..265 | CDD:275380 | 15/46 (33%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 314..338 | CDD:275380 | 9/23 (39%) | ||
LRR_8 | 337..397 | CDD:404697 | 15/60 (25%) | ||
leucine-rich repeat | 339..360 | CDD:275380 | 4/20 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
2 | 1.960 |