DRSC/TRiP Functional Genomics Resources

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Protein Alignment T07F12.2 and rnf130

DIOPT Version :9

Sequence 1:NP_508831.3 Gene:T07F12.2 / 180762 WormBaseID:WBGene00020322 Length:289 Species:Caenorhabditis elegans
Sequence 2:XP_009289393.1 Gene:rnf130 / 553950 ZFINID:ZDB-GENE-050522-525 Length:428 Species:Danio rerio


Alignment Length:109 Identity:22/109 - (20%)
Similarity:43/109 - (39%) Gaps:22/109 - (20%)


- Green bases have known domain annotations that are detailed below.


 Worm   164 VHGCEALRNEIFAPS----VILMERGECSFTVKALNGEKAGATVIMVTDSQNYEYSYHQYYVNMI 224
            :.||......|..|.    |.:|:||:|:|..|.|......|:.:::             |.|..
Zfish    95 LQGCCPHTRFIVPPKTTHWVAIMQRGKCTFKEKILKAAAFNASAVII-------------YNNNT 146

 Worm   225 PDESLDRA-----NVPCVYVAPVTGRYFRDHLEEGGTIKLDIPV 263
            .::::..|     ::..|.:....|:.....||:..|:.:.:.|
Zfish   147 KEDTVTMAHEGTGDIVAVMITESFGKEILGFLEKNQTVLVSVIV 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
T07F12.2NP_508831.3 Peptidases_S8_S53 140..263 CDD:299169 21/107 (20%)
rnf130XP_009289393.1 PA_GRAIL_like 49..188 CDD:239037 21/105 (20%)
zf-RING_2 271..314 CDD:290367
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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