DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment T07F12.2 and rnf167

DIOPT Version :9

Sequence 1:NP_508831.3 Gene:T07F12.2 / 180762 WormBaseID:WBGene00020322 Length:289 Species:Caenorhabditis elegans
Sequence 2:XP_005165694.2 Gene:rnf167 / 101055497 ZFINID:ZDB-GENE-110126-2 Length:401 Species:Danio rerio


Alignment Length:186 Identity:37/186 - (19%)
Similarity:68/186 - (36%) Gaps:57/186 - (30%)


- Green bases have known domain annotations that are detailed below.


 Worm    91 LLFSFLLIIQVAYAKIPRE---YEEVENQDNMLFTVTEPYTLAYTYQMKHAFMLGVHFPDGANKT 152
            |..|.||||.......|.:   |....|..:|||   |.....:...:....::||         
Zfish     8 LAVSVLLIIFCTLVPSPGQAYIYAHYSNMTSMLF---EDLPALFGSALPKDGLMGV--------- 60

 Worm   153 FRNLEMVLADPVHGCEALRNEIFAPS----------VILMERGECSFTVKALNGEKAGATVIMVT 207
                 ::.|.|.:.|..:.....:|:          ::|:.|.:|:|.||..:.::||.:..:| 
Zfish    61 -----LIEARPQNACTPIDPPPASPTPADPNSTTKYIVLIRRYDCNFDVKVYHAQQAGYSAAIV- 119

 Worm   208 DSQNYEYSYHQYYVNMI-----PDESL-DRANVPCVY-----------VAPVTGRY 246
                     |..|.|.:     .:|:: :..::|.|:           :.|..|.|
Zfish   120 ---------HNMYSNSLLNMGYSNETIAEEISIPSVFTSFFASQMLHKIIPEKGAY 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
T07F12.2NP_508831.3 Peptidases_S8_S53 140..263 CDD:299169 24/134 (18%)
rnf167XP_005165694.2 PA_C_RZF_like 14..177 CDD:239038 34/180 (19%)
RING-H2_RNF167 235..280 CDD:319711
RING-H2 finger (C3H2C3-type) 237..278 CDD:319711
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.