DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmy-1 and Mhc

DIOPT Version :9

Sequence 1:NP_508504.2 Gene:nmy-1 / 180581 WormBaseID:WBGene00003776 Length:1963 Species:Caenorhabditis elegans
Sequence 2:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster


Alignment Length:1936 Identity:718/1936 - (37%)
Similarity:1149/1936 - (59%) Gaps:107/1936 - (5%)


- Green bases have known domain annotations that are detailed below.


 Worm    26 RKLCWVPDQNEGFLIGSIKRETNDEVLV-----ELVDTSRQVTISRDDVQKANPPKFDKIEDMSE 85
            :|.||:||:.||:|:|.||....|.|.|     |:.|      |..:.|:|.|||||:|||||::
  Fly    35 KKSCWIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRD------IKSEKVEKVNPPKFEKIEDMAD 93

 Worm    86 LTYLNEASVLHNLKDRYYSSLIYTYSGLFCVVINPYKKLPIYSEDLIEEFKGKKRHEMPPHIFAI 150
            :|.||...|||||:.|||:.|||||||||||.|||||:.|:|:....:.::||:|:|:|||||||
  Fly    94 MTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAI 158

 Worm   151 ADTAYRSMLQEREDQSILCTGESGAGKTENTKKVIQYLAHVAGATRNKSLNAAAQQNIVQKPDVR 215
            :|.||..||....:||:|.||||||||||||||||.|.|.| ||  :|..:.||:..        
  Fly   159 SDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATV-GA--SKKTDEAAKSK-------- 212

 Worm   216 NPIGELEHQLLQANPILEAFGNSKTVKNDNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVLR 280
               |.||.|::|.||:||||||:|||:|||||||||||||:|..:|.::||:||.|||||:||:.
  Fly   213 ---GSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVIS 274

 Worm   281 QAQDERSFHIFYQILRGCSAKEKSEYLL-EGVDNYRFLVNRGITLPNVDDVQEFHSTINSMRIMG 344
            |...|||:||||||:.|.....|...|| :.:.:|..:....:|:.::||.:||..|..:..|:|
  Fly   275 QQSLERSYHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDILG 339

 Worm   345 FADDEISSIMRVVSAVLLLGNLEFTQEKKSDQAMLQDDRVIQKVCHLLGLPVIELQKAFLRPRIK 409
            |...|...:.|:.:||:.:|.::|.|..:.:||....:....:|..|.|....||.|..|:||||
  Fly   340 FTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIK 404

 Worm   410 VGREFVNKAQNQEQAEFAVEAIAKASYERLFKWLVTRINKSLDRTHRQGASFIGILDIAGFEIFD 474
            ||.|||.:.:|.:|...::.|:.|..::|||||||.:.|::|| |.::...|||:|||||||||:
  Fly   405 VGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLD-TQQKRQHFIGVLDIAGFEIFE 468

 Worm   475 INSFEQICINYTNEKLQQLFNNTMFILEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPMGVLALL 539
            .|.|||:|||:|||||||.||:.||:||||||:||||:|.|||||:||...|||||||||:|::|
  Fly   469 YNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSIL 533

 Worm   540 DEECLFPKANDKSFVEKLQKTH---------NKHPKFIVPDMRSKSHFAVVHYAGRVDYSADQWL 595
            :||.:||||.|::|.|||..||         .|.||   |..:: :|||:.||||.|.|:...||
  Fly   534 EEESMFPKATDQTFSEKLTNTHLGKSAPFQKPKPPK---PGQQA-AHFAIAHYAGCVSYNITGWL 594

 Worm   596 MKNMDPLNENVVGLMQNSTDPFVAGIWKDAEFAGICAAEMNETAFGMRSRK-GMFRTVSQLHKEQ 659
            .||.||||:.||...:.|.:..:..|:  |:.||....  .|.|.|.|.:| |.|.|||..:|||
  Fly   595 EKNKDPLNDTVVDQFKKSQNKLLIEIF--ADHAGQSGG--GEQAKGGRGKKGGGFATVSSAYKEQ 655

 Worm   660 LTKLMTTLRNTSPHFVRCIIPNHEKKSGKINSNLVLEQLRCNGVLEGIRICRQGFPNRVPFQEFR 724
            |..||||||:|.||||||||||..|:.|.::::||:.||.||||||||||||:|||||:.:.:|:
  Fly   656 LNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFK 720

 Worm   725 HRYEILTPDVIPKNFIDGKESVRK----MITALDIDTNLYRIGQSKVFFRTGVLAHLEEERDLKL 785
            .||:|:.|     ..:.|.|..:|    :|..:|:..:.||:|.:|||||.|||..:||.||.:|
  Fly   721 MRYKIMCP-----KLLQGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERL 780

 Worm   786 TALIMNFQAQCRGFLSRRLYTRRQQQSSAIRIIQRNGLAYLKLRNWQWWRLFTKVKPLLQVTRTD 850
            ..::...||..||:|||:.:.:.|:|..|::::|||...||:||.|.|::|:.||||||.|:|.:
  Fly   781 GKIMSWMQAWARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIE 845

 Worm   851 DEI------RAKDDELRATKERLLKMEHDFRENEKKLDQVIVERAVIQEQLQQESENSAELDDIR 909
            |||      ..|.:||.|.:.::.|      |.|....:::.|:..:.:.|..|.....:..:..
  Fly   846 DEIARLEEKAKKAEELHAAEVKVRK------ELEALNAKLLAEKTALLDSLSGEKGALQDYQERN 904

 Worm   910 GRLQTRNQELEYIVNDMRDRLSEEEQQNEKNNDERRKQMETVRDLEEQLEQEEQARQKLLLDKTN 974
            .:|..:..:||..:.|:::||::||....:...:::|..:.:..|::.:|..|...||...||..
  Fly   905 AKLTAQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKAT 969

 Worm   975 VDQRLRNLEERLVELQDAYDKLLKEKRLLEEKVEGLTTQLLDHEERAKHGVKAKGRLENQLHELE 1039
            .|.::|||.:.:....:..:||.|||::..|..:....:|...|::..|..|.|.:||..|.|||
  Fly   970 KDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELE 1034

 Worm  1040 QDLNRERQYKSELEQHKRKLLAELEDSKDHLAEKMGKVEELNNQLMKRDEELQHQLTRYDEESAN 1104
            ..|.||::.:.::|:.|||:..:|:.:::.:|:.....:||...:.::|:||.....:.::|...
  Fly  1035 DSLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVV 1099

 Worm  1105 VTLMQKQMRDMQTTIDELREDMETERNARNKAEMTRREVVAQLEKVKGDVLDKVDEATMLQ-DLM 1168
            |...|:|::::|..|:||.|::|.||.||.|||..|.::..:||:: |:.|::...||..| :|.
  Fly  1100 VLKHQRQIKELQARIEELEEEVEAERQARAKAEKQRADLARELEEL-GERLEEAGGATSAQIELN 1163

 Worm  1169 SRKDEEVNATKRAIEQ--IQHTMEGKIEEQKAKFSRQVEELHDQIEQHKKQRSQLEKQQNQADQE 1231
            .:::.|::..:|.:|:  |||  |..:...:.|.:..|.|:.:|::|..|.:::.||::|:...:
  Fly  1164 KKREAELSKLRRDLEEANIQH--ESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQ 1226

 Worm  1232 RADMAQEIALLQASRADIDKKRKIHEAHLMEIQANLAESDEHKRTLIDQLERSRDEL----DHLN 1292
            ..|:...:..:...:|..:|..|..:..|.|:|:.|   ||..|||.| .:.|:.:|    ..|.
  Fly  1227 LNDLRAGVDHITNEKAAQEKIAKQLQHTLNEVQSKL---DETNRTLND-FDASKKKLSIENSDLL 1287

 Worm  1293 RVREEEEHAFANMQRRLATAEGQIQELNEQIQEETRLKIANINRARQLEDEKNALLDE-KEEAEG 1356
            |..||.|...:.:.:...:...|:::......||:|.:...:.:.|.||.:.:.|.:: :|||||
  Fly  1288 RQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEG 1352

 Worm  1357 LRAHLEKEIHAARQGAGEARRKAEE---SVNQQLEELRKKNLRDVEHLQKQLEESEVAKERILQ- 1417
             :|.|::::..|...|...|.|.|.   :.:::|||.::|       ||.:|.|:|...|.:.| 
  Fly  1353 -KADLQRQLSKANAEAQVWRSKYESDGVARSEELEEAKRK-------LQARLAEAEETIESLNQK 1409

 Worm  1418 ------SKKKIQQELEDSSMELENVRASHRDSEKRQKKFESQMAEERVAVQKALLDRDAMSQELR 1476
                  :|:::..|:||..:|::...|....:||:||.|:..:.|.::.|.....:.||..:|.|
  Fly  1410 CIGLEKTKQRLSTEVEDLQLEVDRANAIANAAEKKQKAFDKIIGEWKLKVDDLAAELDASQKECR 1474

 Worm  1477 DRETRVLSLLNEVDIMKEHLEESDRVRRSLQQELQDSISNKDDFGKNVHELEKAKRSLEAELNDM 1541
            :..|.:..|....:..:|.||...|..::|..|::|.:....:.|:|:||:|||::.||||.:::
  Fly  1475 NYSTELFRLKGAYEEGQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDEL 1539

 Worm  1542 RVQMEELEDNLQIAEDARLRLEVTNQALKSESDRAISNKDVEAEEKRRGLLKQIRDLENELENEK 1606
            :..:||.|..|:..|:..||.::....::.|.||.|..|:.|.|..|:...:.:..::..||.|.
  Fly  1540 QAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEA 1604

 Worm  1607 RGKSGAVSHRKKIENQIGELEQQLEVANRLKEEYNKQLKKNQQIIKEYQIECEEARQAKEDIAAL 1671
            :||:.|:..:||:|..|.|||..|:.||:...|..|.:|:.||.:|:.|...||.::|::|....
  Fly  1605 KGKAEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQ 1669

 Worm  1672 LREADRKFRAVEAEREQ----LREANEGLMQARKQLELENDELEELRAKGGGISSEEKRRLEAKI 1732
            |..::|:..|::.|.|:    |.:|:.|..||.::|...:::|.|:.|:...||: .||:||:::
  Fly  1670 LGISERRANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISA-AKRKLESEL 1733

 Worm  1733 AQLEEELEEEQSNCELAIDKQRKAQVQLEQITTDLSMERTLNQKTEAEKQSLERSNRDYKAKITE 1797
            ..|..:|:|..:..:.:.:|.:||.|...::..:|..|:...|..|..:::||:..::.:.::.|
  Fly  1734 QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDE 1798

 Worm  1798 LESGAQSRARAQMAALEAKVQYLEDQLNVEGQEKTAANRAARRLEKRLNDTTQQFEDEKRANEQA 1862
            .|:.|....:..:..||.:|:.||::|:.|.:....|.:..|:.|:|:.:.:.|.|::::.:|:.
  Fly  1799 AEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEEDRKNHERM 1863

 Worm  1863 KELLEKSNLKNRNLRRQLDEAEDEMSRERTKHRNVQR---EADDLLDANEQ 1910
            ::|::|...|.:..:||::|||:..:....|.|..|:   ||::..|..||
  Fly  1864 QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQ 1914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmy-1NP_508504.2 Myosin_N 27..65 CDD:280832 16/42 (38%)
Myosin_head 80..770 CDD:278492 352/704 (50%)
MYSc_class_II 92..770 CDD:276951 345/692 (50%)
Myosin_tail_1 847..1919 CDD:279860 304/1095 (28%)
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 16/42 (38%)
MYSc 81..777 CDD:214580 365/723 (50%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 345/692 (50%)
Myosin_tail_1 842..1897 CDD:279860 297/1076 (28%)
V_Alix_like 1557..1877 CDD:187408 90/320 (28%)
ATP-synt_B <1671..1771 CDD:304375 27/100 (27%)
TMPIT 1739..>1825 CDD:285135 20/85 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D47111at2759
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100110
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X58
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.720

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