DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Neurod1 and tap

DIOPT Version :9

Sequence 1:NP_035024.1 Gene:Neurod1 / 18012 MGIID:1339708 Length:357 Species:Mus musculus
Sequence 2:NP_524124.1 Gene:tap / 39935 FlyBaseID:FBgn0015550 Length:398 Species:Drosophila melanogaster


Alignment Length:325 Identity:91/325 - (28%)
Similarity:125/325 - (38%) Gaps:75/325 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse    14 PQPQGPPSWTDECLSS----------QDEEHEADKKEDELEAMNAEEDSLRNGGEEEEEDEDLEE 68
            |||....:|....|||          ....|........:|.:|:.   ..||    ..|..|..
  Fly    57 PQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLNSR---ATNG----VFDPPLTS 114

Mouse    69 EEEEEEEEED-QKPKRR-GPKKKKMTKAR-------LERFKLRRMKANARERNRMHGLNAALDNL 124
            ...:..|:.: .:|||: ...|.::|::|       ::||  ||||||.|||||||.||.||:.|
  Fly   115 TPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVKIKRF--RRMKANDRERNRMHNLNDALEKL 177

Mouse   125 RKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKS--PDLVSFVQTLCKGLSQPTTNLVAGC 187
            |..:|...:..||:|||.||.|.|||:||.::|.||.|  .||.........|  :..|..:...
  Fly   178 RVTLPSLPEETKLTKIEILRFAHNYIFALEQVLESGGSINLDLEKLQNFTLSG--ERITKELFDA 240

Mouse   188 LQLNPRTFLPEQNPDMPPHLPTASASFPVHPYSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAA 252
            |.:||:.:            |.....||     |.....|...:.|..:|   |.:.||     |
  Fly   241 LFVNPQPY------------PLFGRMFP-----YGQGMAPLAQHQTAPAS---HAEQPP-----A 280

Mouse   253 LEPFFESPLTDCTSPSFDGPLSPP-LSINGNFSFKHEPSAEFEKNYAFTMHYPAATLAGPQSHGS 316
            :..|         ....|.|..|| ....|:..|.|:...:        .|.|......||...|
  Fly   281 MGGF---------QHGMDYPQQPPGFDFTGSMRFYHQQQQQ--------PHQPHHLQPNPQQESS 328

Mouse   317  316
              Fly   329  328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neurod1NP_035024.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..94 20/91 (22%)
Nuclear localization signal. /evidence=ECO:0000255 87..93 1/5 (20%)
HLH 100..158 CDD:238036 33/57 (58%)
Neuro_bHLH 160..284 CDD:289310 26/126 (21%)
tapNP_524124.1 HLH 155..207 CDD:278439 32/51 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835499
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.