DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neurod1 and dimm

DIOPT Version :10

Sequence 1:NP_035024.1 Gene:Neurod1 / 18012 MGIID:1339708 Length:357 Species:Mus musculus
Sequence 2:NP_523611.1 Gene:dimm / 35404 FlyBaseID:FBgn0023091 Length:390 Species:Drosophila melanogaster


Alignment Length:246 Identity:65/246 - (26%)
Similarity:99/246 - (40%) Gaps:61/246 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse    82 KRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLA 146
            :|:|....|      || .:||:::|.|||.|||.||.|..:||:|:|.....::|||||||.||
  Fly   144 RRKGALNAK------ER-NMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLA 201

Mouse   147 KNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNPDMPPHLPTAS 211
            ||||..|:.|:.|.::.:..:.         :..:..|.|.|..|               |.:.|
  Fly   202 KNYIINLTHIILSKRNEEAAAL---------ELNSGAVGGVLLSN---------------LSSES 242

Mouse   212 ASFPVHPYSYQSPGLPSPPYG-------TMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSF 269
            .. ||      :.|:|:....       |:.|...|..     |..||.:....:..|..|||:.
  Fly   243 GG-PV------ASGIPANSNAATICFEDTLASGGAFDC-----AILAATDGSLLNAATVTTSPAM 295

Mouse   270 DGPLSPPLSINGNFSFKHEPSAEFEKNYAFTMHYPAATLAGPQSHGSIFSS 320
            .       ||.........|..:.::..:...|:..|.    ..||.:.:|
  Fly   296 Q-------SIQSQAIHLQTPMEQQQQQASHLPHHQQAM----HGHGHLGAS 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neurod1NP_035024.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..94 3/11 (27%)
bHLH_TS_NeuroD1 75..160 CDD:381562 36/77 (47%)
Nuclear localization signal. /evidence=ECO:0000255 87..93 1/5 (20%)
Neuro_bHLH 160..284 CDD:463621 22/130 (17%)
dimmNP_523611.1 bHLH_TS_dimmed_like 157..216 CDD:381555 32/58 (55%)

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