DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ncoa3 and Clk

DIOPT Version :9

Sequence 1:NP_032705.2 Gene:Ncoa3 / 17979 MGIID:1276535 Length:1403 Species:Mus musculus
Sequence 2:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster


Alignment Length:1383 Identity:284/1383 - (20%)
Similarity:442/1383 - (31%) Gaps:550/1383 - (39%)


- Green bases have known domain annotations that are detailed below.


Mouse    35 EKWRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIR---QIKEQGKTISSDDDV 96
            ||.||:|.:..:.:|:.|||.:       :.|.||..:||.|:..::   :..::.|......|.
  Fly    24 EKKRRDQFNSLVNDLSALISTS-------SRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDW 81

Mouse    97 QKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYSI 161
            :.|.:|:        |....|:|::||||:.|.:..|:|.:.||::|..|.|..:||.|.::|.:
  Fly    82 KPAFLSN--------DEYTHLMLESLDGFMMVFSSMGSIFYASESITSQLGYLPQDLYNMTIYDL 138

Mouse   162 LHEQDRKDFLKHL--PKSTVNGVSWTNENQRQKSHTFNCRMLMKTH---DILEDVNASPETRQRY 221
            .:|.|.:..|...  |...:        ..||...:.:.::...||   ..:|.|:|:     .|
  Fly   139 AYEMDHEALLNIFMNPTPVI--------EPRQTDISSSNQITFYTHLRRGGMEKVDAN-----AY 190

Mouse   222 ETMQCFALSQPRAMLEEGEDLQCCMICVARRVTAPFPSSPESFI--TRHDLSGKVVNIDTNSLRS 284
            |.::                                      |:  .|:|.:....:....|..|
  Fly   191 ELVK--------------------------------------FVGYFRNDTNTSTGSSSEVSNGS 217

Mouse   285 SMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYVHGHAETP--VYRFSLADGTIVSAQTKSK 347
            :.:|.       .:.|.|..|......:|..:...   |..:.|  :...|:.|           
  Fly   218 NGQPA-------VLPRIFQQNPNAEVDKKLVFVGT---GRVQNPQLIREMSIID----------- 261

Mouse   348 LFRNPVTNDRHGFISTH-------FLQREQNGYRPNPNPAGQGIRPPAAGCGVSMSPNQNVQMMG 405
                |.:|:   |.|.|       ||...               .||..|    ..|.:.:...|
  Fly   262 ----PTSNE---FTSKHSMEWKFLFLDHR---------------APPIIG----YMPFEVLGTSG 300

Mouse   406 SRTYGVPDPSN----------TGQMGGARYGASSSVASLTPGQS---LQSP---SSYQ-NS---- 449
            ...|...|..:          ||:      |.|.....||.||.   ||:.   |.:| ||    
  Fly   301 YDYYHFDDLDSIVACHEELRQTGE------GKSCYYRFLTKGQQWIWLQTDYYVSYHQFNSKPDY 359

Mouse   450 --------SYG-LSMSSPPHGSPGLGPNQQNIMISPRNRGSPKMASHQFSPAAGAHSPMGPSGNT 505
                    ||. :...|...|......|      |..|.||.|:.:                 :|
  Fly   360 VVCTHKVVSYAEVLKDSRKEGQKSGNSN------SITNNGSSKVIA-----------------ST 401

Mouse   506 GSHSFSSSSLSAL---QAISEGVGTSLL-STLSSPG-------PKLDNSPNMNIS--QPSKVSGQ 557
            |:.|.|:|:.:.|   :..|:.:.::|| ::|:|.|       |.:|:||..:.|  ||   ||.
  Fly   402 GTSSKSASATTTLRDFELSSQNLDSTLLGNSLASLGTETAATSPAVDSSPMWSASAVQP---SGS 463

Mouse   558 DSKSPLGLYCEQNPVESSVCQSNSRDHPSEKESKESSGEVSETPRGPLESKGHKKLLQLLTC-SS 621
                     |:.||:::|        .|:     .|.|.:|.|...|   |..:|      | ..
  Fly   464 ---------CQINPLKTS--------RPA-----SSYGNISSTGISP---KAKRK------CYFY 497

Mouse   622 DDRGHSSLTNSPLDPNCKDSSVSVTSPSGVSSSTSGTVSSTSNVHGSLLQEKHRILHKLLQNGNS 686
            ::||:.|.:.|.       |:.||||...:.:.    |||.|....|..:|.||..|....:.:.
  Fly   498 NNRGNDSDSTSM-------STDSVTSRQSMMTH----VSSQSQRQRSHHREHHRENHHNQSHHHM 551

Mouse   687 PAEVAKITAEATGKDTSSTASCGEGTTRQEQLSPKKKENNALLRYLLDRDDPSDVLAKELQPQAD 751
            ..:                        :|.|...::.:.:                 ::||.|. 
  Fly   552 QQQ------------------------QQHQNQQQQHQQH-----------------QQLQQQL- 574

Mouse   752 SGDSKLSQCSCSTNPSSGQEKDPKIKTETNEEVSGDLDNLDAILGDLTSSDFYNNPTNGGHPGAK 816
                   |.:..|         ||               :..:|                 |.|.
  Fly   575 -------QHTVGT---------PK---------------MVPLL-----------------PIAS 591

Mouse   817 QQMFAGPSSLGLRSPQPVQSVRPPYNRAVSLDSPVSVGSGPPVKNVSAFPGLPKQPILAGNPRMM 881
            .|:.||.:   .:.|||...:..|...|.:...|....:..|::.|.|  ..|..|:|  :|..:
  Fly   592 TQIMAGNA---CQFPQPAYPLASPQLVAPTFLEPPQYLTAIPMQPVIA--PFPVAPVL--SPLPV 649

Mouse   882 DSQENYGANMGPNRNVPVNPTSSPGDWGLAN-------------------------SRASRMEPL 921
            .||    .:|.|: .|.:.||.|.....|..                         ||.:.::|:
  Fly   650 QSQ----TDMLPD-TVVMTPTQSQLQDQLQRKHDELQKLILQQQNELRIVSEQLLLSRYTYLQPM 709

Mouse   922 AS----------SPLGRTGADYSATLPRPAMGGSVPTLP-------------------------- 950
            .|          :.:|..||.....|   ...||....|                          
  Fly   710 MSMGFAPGNMTAAAVGNLGASGQRGL---NFTGSNAVQPQFNQYGFALNSEQMLNQQDQQMMMQQ 771

Mouse   951 ---------------------LRSNRLPGARPSLQQQQQQQQQQQQQQQQQQQQQQQQQQQQMLQ 994
                                 |:.:.....:...||||||||||||||||||||||||||||.||
  Fly   772 QQNLHTQHQHNLQQQHQSHSQLQQHTQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQ 836

Mouse   995 MRTGEIPMGMGVNPYSPAVPSNQPGSWPEGMLSMEQGPHGSQNRPLLRNSLDDLLGPPSNAEGQS 1059
            ::                                      .||..|||..:||:           
  Fly   837 LQ--------------------------------------QQNDILLREDIDDI----------- 852

Mouse  1060 DERALLDQLHTLLSNTDATGLEEIDRALGIPELVNQGQALESKQDVFQGQEAAVMMDQKAALYGQ 1124
            |....|..||:|.|.:..........        |..|:.....::..|.:            ..
  Fly   853 DAFLNLSPLHSLGSQSTINPFNSSSN--------NNNQSYNGGSNLNNGNQ------------NN 897

Mouse  1125 TYPAQGPPLQGGFN--------LQGQSPSFNSMMGQISQQGSFPLQG-----MHPRAGLVRPRTN 1176
            ...:..||.....:        ....|||.|..|| ||..|| ..|.     ||          .
  Fly   898 NNRSSNPPQNNNEDSLLSCMQMATESSPSINFHMG-ISDDGS-ETQSEDNKMMH----------T 950

Mouse  1177 TPKQLRMQLQQRLQGQQFLNQ-SRQALEMKMENPAGTAVMRPMMPQQAFFNAQMAAQQK----RE 1236
            :...|..|.||:.|.||.|.| .:|:......||              |.|:|...|.:    .|
  Fly   951 SGSNLVQQQQQQQQQQQILQQHQQQSNSFFSSNP--------------FLNSQNQNQNQLPNDLE 1001

Mouse  1237 LMSHHLQQQRMAMMMSQP 1254
            ::.:.:.|::...:.:.|
  Fly  1002 ILPYQMSQEQSQNLFNSP 1019

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ncoa3NP_032705.2 bHLH_SF 33..102 CDD:381792 18/69 (26%)
PAS 117..172 CDD:214512 20/54 (37%)
PAS_11 262..372 CDD:373151 21/120 (18%)
NCOA_u2 451..564 CDD:374708 30/126 (24%)
SRC-1 608..696 CDD:370145 21/88 (24%)
DUF4927 714..801 CDD:374467 10/86 (12%)
Nuc_rec_co-act 1056..1103 CDD:312376 8/46 (17%)
Med15 1094..>1398 CDD:312941 37/179 (21%)
DUF1518 1270..1326 CDD:369380
ClkNP_001014576.1 HLH 16..68 CDD:238036 15/50 (30%)
PAS 93..153 CDD:214512 21/59 (36%)
PAS 264..366 CDD:238075 27/129 (21%)
PAS_11 265..368 CDD:291273 27/130 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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