DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ncam2 and DIP-epsilon

DIOPT Version :9

Sequence 1:NP_001106679.1 Gene:Ncam2 / 17968 MGIID:97282 Length:837 Species:Mus musculus
Sequence 2:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster


Alignment Length:483 Identity:108/483 - (22%)
Similarity:175/483 - (36%) Gaps:136/483 - (28%)


- Green bases have known domain annotations that are detailed below.


Mouse   117 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY---------HNEEVTTIPDNRFAVLANNN-- 170
            |.:|:.......|.:.::.|.|.:..:..|:|::         ||..:|..|  |.:|..:.:  
  Fly    54 FTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNP--RISVTHDKHDK 116

Mouse   171 -----LQILNINKSDEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAIMMPQKSFNATAERGEEMT 229
                 |.|.|:.:.|.|.|.|: ..|.|:.:..|..::|..|:..|:    .|.:.....|:.:|
  Fly   117 HRTWFLHINNVQEEDRGRYMCQINTVTAKTQYGFVKVVVPPNIDDAL----TSSDIIVREGDNVT 177

Mouse   230 LTCKASGSPDPTISWFR-NGKLIEENEKYILKGSNTE-LTVRNIINKDGGSYVCKATN------- 285
            |.|||.|||:|||.|.| :|..|..|:...:....|: |.:..|.....|:|:|.|:|       
  Fly   178 LRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVS 242

Mouse   286 ---KAGEDQKQAFLQVFVQPHILQLKNETTSENGHVTLVCEAEGEPVPEITWKRAIDGVMFSEGD 347
               |...|    |..:...||  ||.......|  :||.|..|..|.....|.|..| .|.:|..
  Fly   243 KRIKVSVD----FSPMVWIPH--QLVGIPIGFN--ITLECFIEANPTSLNYWTREND-QMITESS 298

Mouse   348 KSPDGRIEVKGQHGRSS------LHIRDVKLSDSGRYDCEAASRIGGHQRSMHLDIEYAPKFVSN 406
            |.....|.     |..|      |.|.:|:.||.|.|.|.|.:..|                   
  Fly   299 KYKTETIP-----GHPSYKATMRLTITNVQSSDYGNYKCVAKNPRG------------------- 339

Mouse   407 QTMYYSWEGN-PINISCDVTANPPASIHWRREKLLLPAKNTTHLKTHSVGRKMILE---IAPTSD 467
                 ..:|| .:.:|...|..||.:             .||..:|.:...::.|:   ..|.:.
  Fly   340 -----DMDGNIKLYMSSPPTTQPPPT-------------TTTLRRTTTTAAEIALDGYINTPLNG 386

Mouse   468 NDFGRYNCTATNRIGTRFQEYILELADVPSSPHGVKII----ELSQTTAKISFNKPE-------- 520
            |..|......||.:             :.|....:|.:    |:.::..|::.:.|:        
  Fly   387 NGIGIVGEGPTNSV-------------IASGKSSIKYLSNLNEIDKSKQKLTGSSPKGFDWSKGK 438

Mouse   521 ---SHGGVPIHHYQVDVKEVASETWKIV 545
               |||            .:.:.:|.::
  Fly   439 SSGSHG------------NLMASSWPLI 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ncam2NP_001106679.1 Ig1_NCAM-2 21..112 CDD:143274
I-set 22..111 CDD:254352
I-set 117..193 CDD:254352 21/92 (23%)
IGc2 128..189 CDD:197706 18/77 (23%)
Ig 208..301 CDD:299845 30/104 (29%)
I-set 215..298 CDD:254352 29/94 (31%)
Ig 300..397 CDD:299845 29/102 (28%)
IG_like 308..395 CDD:214653 25/92 (27%)
IG_like 413..491 CDD:214653 15/81 (19%)
IGc2 414..482 CDD:197706 15/71 (21%)
FN3 496..588 CDD:238020 9/65 (14%)
fn3 594..678 CDD:278470
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 764..810
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 21/97 (22%)
Ig 69..139 CDD:143165 17/71 (24%)
IG_like 165..249 CDD:214653 27/83 (33%)
IGc2 172..237 CDD:197706 25/64 (39%)
IG_like 267..348 CDD:214653 27/112 (24%)
Ig 270..339 CDD:299845 23/74 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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