DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ncam2 and DIP-theta

DIOPT Version :9

Sequence 1:NP_001106679.1 Gene:Ncam2 / 17968 MGIID:97282 Length:837 Species:Mus musculus
Sequence 2:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster


Alignment Length:685 Identity:144/685 - (21%)
Similarity:235/685 - (34%) Gaps:171/685 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse    92 RCQATDAKGQTQEATVVLEIYQKL----TFREVVSPQEFKQGEDAEVVCRVSSSPAPAV------ 146
            |.|...|.|:.|....:.||..:|    ....|||           ::|...:.|..|.      
  Fly    18 RRQRRRAAGKLQRKREMPEISSRLIVATATAAVVS-----------IICLSLALPGCAAQESDDE 71

Mouse   147 SWLYHNEEVTTIPDNRFAVLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII---VIVNVP 208
            ..|:|.:::            ::..|...|.:|:|..:......|.:.:.:..:.|   .:||..
  Fly    72 GELHHLDQM------------HHQHQDFIIGESEEHDHIAHHLAEMQNKDELLEDIREDTVVNAI 124

Mouse   209 PAIMMPQKSF-----NATAERGEEMTLTCKASGSPDPTISWFR---------NGKLIEENEKYIL 259
            |...:|:  |     |.|.....|..|.|.........|:|.|         ...:|.:|.:..:
  Fly   125 PEKDLPK--FGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSI 187

Mouse   260 KGSNTE---LTVRNIINKDGGSYVCKATNKAGEDQKQAFLQVFVQPHILQLKNET---TSENGHV 318
            ..:...   |.:|::...|.|.|:|:......:.| ..:|.|.|.|.||.....|   ..|..:|
  Fly   188 THAEKRAWILRIRDVKESDKGWYMCQINTDPMKSQ-VGYLDVVVPPDILDYPTSTDMVIREGSNV 251

Mouse   319 TLVCEAEGEPVPEITWKRAIDGVMFSEGDK---SPDGRIEVKGQHGRSSLHIRDVKLSDSGRYDC 380
            ||.|.|.|.|.|.|||:|        ||.:   .|:| .|....:| |.|.|..|...:.|.|.|
  Fly   252 TLKCAATGSPTPTITWRR--------EGGELIPLPNG-AEAVAYNG-SFLTIAKVNRLNMGAYLC 306

Mouse   381 EAASRIGGH-QRSMHLDIEYAPK-FVSNQTMYYSWEGNPINISCDVTANPPASIHW-RREKLLLP 442
            .|::.|... .:.:.|.:.:.|. ::.||.:..:...| |.:.|...|.|.:..:| :.:.:::|
  Fly   307 IASNGIPPTVSKRVMLIVHFPPMIWIQNQLVGAALTQN-ITLECQSEAYPKSINYWMKNDTIIVP 370

Mouse   443 AKNTTHLKTHSVGRK--MILEIAPTSDNDFGRYNCTATNRIGTRFQEYILELADVPSSPHGVKII 505
            .:.... :|...|.|  |.|.|......|||.|.|.|.|.:|              .:...:|:.
  Fly   371 GERFVP-ETFESGYKITMRLTIYEVDIQDFGAYRCVAKNSLG--------------DTDGAIKLY 420

Mouse   506 ELSQTTAK----------------ISFNKPESHGGVP---IHHYQVDVKEVASETWKIVR----S 547
            .:.|||..                :.:||.:.:|...   .:.|..:.......| |:.|    |
  Fly   421 HIPQTTTMTTMAPTVSINTVPVVLVKYNKEQRYGSSQNSNTNPYNFNPGNSQQNT-KLQRGKSNS 484

Mouse   548 HGVQTMVVLSSLEPNTTYEIRVAAV----NGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKS 608
            .|       |...|:....:.|.|.    |.:.....|......:...|:......|.|......
  Fly   485 KG-------SDQSPSGLNNVFVGATSSLWNSQDHHSSSSSSSSASSRGRDHHQQQHHQQQQQNHG 542

Mouse   609 FKISITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLG 673
            .....:.:.||.:|   ::..:.:|...|.              |:.:|...|:      |:||.
  Fly   543 SDHGASYRSDGKSP---HLTNHDAKSLTDD--------------LDRMQDLKGW------ASRLS 584

Mouse   674 YSEPTVYEFSMPPKPNIIKDTLFNGLGLGAIIGLG 708
            ...|.                    |||..|:|:|
  Fly   585 PISPI--------------------LGLSMILGVG 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ncam2NP_001106679.1 Ig1_NCAM-2 21..112 CDD:143274 6/19 (32%)
I-set 22..111 CDD:254352 5/18 (28%)
I-set 117..193 CDD:254352 13/81 (16%)
IGc2 128..189 CDD:197706 9/66 (14%)
Ig 208..301 CDD:299845 22/109 (20%)
I-set 215..298 CDD:254352 19/99 (19%)
Ig 300..397 CDD:299845 34/103 (33%)
IG_like 308..395 CDD:214653 29/93 (31%)
IG_like 413..491 CDD:214653 21/80 (26%)
IGc2 414..482 CDD:197706 20/70 (29%)
FN3 496..588 CDD:238020 19/118 (16%)
fn3 594..678 CDD:278470 13/83 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 764..810
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 19/93 (20%)
IG_like 137..230 CDD:214653 19/93 (20%)
IG_like 240..324 CDD:214653 30/93 (32%)
IGc2 247..310 CDD:197706 27/72 (38%)
Ig 327..419 CDD:299845 24/107 (22%)
IG_like 343..420 CDD:214653 22/92 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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