DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ncam1 and Fas2

DIOPT Version :9

Sequence 1:XP_006510118.1 Gene:Ncam1 / 17967 MGIID:97281 Length:1162 Species:Mus musculus
Sequence 2:NP_001284854.1 Gene:Fas2 / 31364 FlyBaseID:FBgn0000635 Length:885 Species:Drosophila melanogaster


Alignment Length:848 Identity:220/848 - (25%)
Similarity:357/848 - (42%) Gaps:136/848 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse    10 TLFFLGTAVSLQVDIVPSQGEIS---VGESKFFLCQ--VAGDAKDKDISWF---------SPNGE 60
            :|..|..|.|..::|.|.| |:.   ||:.....|:  |...:...|:.|.         .|||.
  Fly    21 SLIELTRAQSPILEIYPKQ-EVQRKPVGKPLILTCRPTVPEPSLVADLQWKDNRNNTILPKPNGR 84

Mouse    61 KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT 125
                ||..:.......:|..|.|.:.:::..|.|.|..:..:....|..|.:|.:..:.:.|||.
  Fly    85 ----NQPPMYTETLPGESLALMITSLSVEMGGKYYCTASYANTEILEKGVTIKTYVAITWTNAPE 145

Mouse   126 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 190
            .|....|:|.|::|:|.:...|||.|...| |.|...:.:::|.:|..| ||.::::|||.|.|.
  Fly   146 NQYPTLGQDYVVMCEVKADPNPTIDWLRNG-DPIRTTNDKYVVQTNGLL-IRNVQESDEGIYTCR 208

Mouse   191 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL----GQSVTLVCDADGFPEPTMSWTKDG 251
            ..::..||:..:.|:|.|.:.|      .|::...||    |:.....|.|.|.|.|.:||.:|.
  Fly   209 AAVIETGELLERTIRVEVFIQP------EIISLPTNLEAVEGKPFAANCTARGKPVPEISWIRDA 267

Mouse   252 EPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVEN 316
            ..:.....|  :...:..:..:||.:|.::|...|.|:|:|:||..|....|.|..:|:|..:.|
  Fly   268 TQLNVATAD--RFQVNPQTGLVTISSVSQDDYGTYTCLAKNRAGVVDQKTKLNVLVRPQIYELYN 330

Mouse   317 QTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRPEK----QETLDGHMVVRSH-- 375
            .|....:| :.:||.|.|.|.|:||:|            .|...|:    |:..|..:::..:  
  Fly   331 VTGARTKE-IAITCRAKGRPAPAITFR------------RWGTQEEYTNGQQDDDPRIILEPNFD 382

Mouse   376 ----ARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAP---KLQGPVAVYTWEGNQV 433
                ....:|.:.:.:.:|.|.|.|.|.|......::.::.|::||   .::....|::||..:.
  Fly   383 EERGESTGTLRISNAERSDDGLYQCIARNKGADAYKTGHITVEFAPDFSHMKELPPVFSWEQRKA 447

Mouse   434 NITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 498
            |::|.....|:|||.|..:|:.:.....:|:||..|...|.|.|.|.:...:..|.|.|.|..|.
  Fly   448 NLSCLAMGIPNATIEWHWNGRKIKDLYDTNLKIVGTGPRSDLIVHPVTRQYYSGYKCIATNIHGT 512

Mouse   499 ESLEFILVQADTPSSPSIDRVEPYSSTA-QVQFD--EPEATGGVPILKYKAEWKSLGEESWHFKW 560
            ...:..|.:|..|.  .:...:|...|| .:.||  .|....|:|||.|..::|......|...:
  Fly   513 AEHDMQLKEARVPD--FVSEAKPSQLTATTMTFDIRGPSTELGLPILAYSVQYKEALNPDWSTAY 575

Mouse   561 YDAKEANMEGIVTIMGLKPETRYSVRLAALNGKGLGEISAATEFKT---------QPVHSPPPLA 616
            ..:...:...||.  ||:|:|.||.|.||.|..|||......:..|         :|:|:|   .
  Fly   576 NRSWSPDSPYIVE--GLRPQTEYSFRFAARNQVGLGNWGVNQQQSTPRRSAPEEPKPLHNP---V 635

Mouse   617 PANSSTLVPLSPRATTWPLPVLPTTDLSKGEPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHY 681
            ..:....|.:||.:..:        :|..|.|:                       |.|.||..|
  Fly   636 QHDKEEPVVVSPYSDHF--------ELRWGVPA-----------------------DNGEPIDRY 669

Mouse   682 LVKY--RAKLASEWKPEIRLPSGSDHVM------LKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 738
            .:||  ..|::..| .|:.....:..||      :..|..|..|.:.:.|.|..|.|..|..:.:
  Fly   670 QIKYCPGVKISGTW-TELENSCNTVEVMETTSFEMTQLVGNTYYRIELKAHNAIGYSSPASIIMK 733

Mouse   739 TSAQPTAIPANGSPTAGLSTGAIVGILIVIFVLLLVVMDITCYFLNKCGLLMCIAVN------LC 797
            |:.....|..  :.....|:.|||||.|...:|||.|:|:.|          ||.|:      :|
  Fly   734 TTRGIDVIQV--AERQVFSSAAIVGIAIGGVLLLLFVVDLLC----------CITVHMGVMATMC 786

Mouse   798 GKA 800
            .||
  Fly   787 RKA 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ncam1XP_006510118.1 Ig1_NCAM-1 20..115 CDD:143273 24/108 (22%)
IG 124..190 CDD:214652 23/65 (35%)
Ig3_NCAM-1_like 211..308 CDD:143207 27/100 (27%)
Ig_NCAM-1 307..413 CDD:143277 25/115 (22%)
Ig_3 417..494 CDD:372822 23/79 (29%)
FN3 509..606 CDD:238020 29/99 (29%)
fn3 649..731 CDD:365830 18/89 (20%)
PHA03247 <905..1140 CDD:223021
Fas2NP_001284854.1 IG_like 39..133 CDD:214653 21/98 (21%)
IG_like 144..226 CDD:214653 28/83 (34%)
IGc2 152..209 CDD:197706 22/58 (38%)
I-set 230..319 CDD:254352 26/96 (27%)
IGc2 243..309 CDD:197706 18/67 (27%)
IG_like 330..424 CDD:214653 23/106 (22%)
IGc2 339..412 CDD:197706 19/84 (23%)
Ig 447..518 CDD:143165 21/70 (30%)
fn3 534..611 CDD:278470 27/78 (35%)
FN3 640..735 CDD:238020 26/126 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40754
Inparanoid 1 1.050 264 1.000 Inparanoid score I3056
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48678
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002001
OrthoInspector 1 1.000 - - otm43641
orthoMCL 1 0.900 - - OOG6_103800
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.730

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