DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo1f and ck

DIOPT Version :9

Sequence 1:NP_444444.2 Gene:Myo1f / 17916 MGIID:107711 Length:1098 Species:Mus musculus
Sequence 2:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster


Alignment Length:789 Identity:295/789 - (37%)
Similarity:448/789 - (56%) Gaps:62/789 - (7%)


- Green bases have known domain annotations that are detailed below.


Mouse    12 HNVKQSGVDDMVLLPQITEDAIVSNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQG 76
            |.....||:||:.|..:.|..|:.||..|:.::.|:||.||:|::|||::.:|.:|..:|.||:.
  Fly    58 HASSVQGVEDMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKE 122

Mouse    77 AAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGDKVQHVK 141
            ....|.||||:|:.||.|.:|....::||::||||||||||.:.|.|:.|::.:||   |...::
  Fly   123 RKIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISG---KHSWIE 184

Mouse   142 DIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERN 206
            ..||::||:|||||||||:||:||||||||.:|.||..|..:|.||..:||||||:|.||.:|||
  Fly   185 QQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERN 249

Mouse   207 FHIYYQLLEGASQEQQQNLGLMTPDYYYYLNQSDTYKVEGTDDRSDFSETLSAMQVIGIPTSVQQ 271
            :|::|.:|.|.|.:::..|.|.....|.||...::...||.||.::||:..|||:|:..  |.|:
  Fly   250 YHVFYCILAGLSADEKSRLDLGMAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVLLF--SDQE 312

Mouse   272 L--VLQLVAGILHLGNISFCEEGNYARVESVDLLAFP--------AYLLGIDSGRLQEKLTSRKM 326
            :  :::|:|.:||.|||.:    ....|:::|....|        |.|||:....|.:.||.|.:
  Fly   313 IWEIIKLLAALLHCGNIKY----KATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTL 373

Mouse   327 DSKWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQ--EEYSIGVLDIYG 389
            .:    ..|::..||:.:|:...|||..||:|.|:|..:|..||.|:.||:  ...:||||||:|
  Fly   374 FA----HGETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAIFKPRGTSRNAIGVLDIFG 434

Mouse   390 FEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIENKLSP 454
            ||.|.:|.|||||||:.||.|||.|::...|.|||||..|.|.|..||:.:|:...|||  .:..
  Fly   435 FENFDQNSFEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFVDNQDALDLI--AIKQ 497

Mouse   455 PGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHF----NSWSAGFVIHHYAGKVSYDVSG 515
            ..||:::|:......    |.|||:|.||....|:|:::    :..:..|.::|:||.|.||..|
  Fly   498 LNIMALIDEEARFPK----GTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFAGVVFYDTRG 558

Mouse   516 FCERNRDVLFSDLIELMQSSDQDFLRMLFPE--KLNIDKKGRPSTAGSKIKKQANDLVSTLKKCT 578
            |.::|||....||:.|:..|...|||.:|.:  ::..:.:.|..|..::.:|..:.|:.||..|.
  Fly   559 FLDKNRDTFSPDLLHLVSQSTNKFLRQIFAQDIEMGAETRKRTPTLSTQFRKSLDALMKTLSSCQ 623

Mouse   579 PHYIRCIKPNETKRPRDWEESRVKHQVEYLGLRENIRVRRAGFAYRRQFSKFLQRYAILTPETWP 643
            |.:||||||||.|:|..::......|:.|.|:.|.||:||||:..|..|.:|::||..|.|...|
  Fly   624 PFFIRCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFLIPGVPP 688

Mouse   644 RWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEE----------MRERKFDGF-- 696
            ..|.| .|.....:.||.:....||:|.||||:|:...|||.:|          :.:|...|:  
  Fly   689 AHRTD-CQAATSRICAVVLGKSDYQLGHTKVFLKDAHDLFLEQERDRVLTRKILILQRSIRGWVY 752

Mouse   697 ----------ARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPE 751
                      |.|:|:.|:.:...::|..||.....:....:.|..:...|:..|..:||:  ..
  Fly   753 RRRFLRLRAAAITVQRFWKGYAQRKRYRNMRVGYMRLQALIRSRVLSHRFRHLRGHIVGLQ--AH 815

Mouse   752 LRQFLAKRE 760
            .|.:|.:||
  Fly   816 ARGYLVRRE 824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo1fNP_444444.2 MYSc 12..690 CDD:214580 277/705 (39%)
MYSc_Myo1 31..677 CDD:276829 265/663 (40%)
Myosin_TH1 717..897 CDD:283635 10/44 (23%)
SH3_MyoIe_If_like 1045..1097 CDD:212761
ckNP_001285949.1 MYSc 64..733 CDD:214580 276/688 (40%)
MYSc_Myo7 77..721 CDD:276832 265/663 (40%)
MyTH4 <1138..1245 CDD:214535
B41 1251..1467 CDD:214604
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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