DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exp-2 and Shawl

DIOPT Version :9

Sequence 1:NP_001367760.1 Gene:exp-2 / 179003 WormBaseID:WBGene00001374 Length:510 Species:Caenorhabditis elegans
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:516 Identity:132/516 - (25%)
Similarity:209/516 - (40%) Gaps:144/516 - (27%)


- Green bases have known domain annotations that are detailed below.


 Worm    81 LNIGGTSFMILIDAILRADTTTFLSRFVQLTHTARLKVADA-YISADDAYYFQRSPTSFEAVFQY 144
            ||:.|          :|.:|.....:.:..|..:||..|.| |....:.|:|.|.|..|..:..|
  Fly     9 LNVSG----------IRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNY 63

 Worm   145 YATGVVHRPSEICPASFLSELDFWRISHQHVGSCC-------------------ADIIPQKREEE 190
            |.||.:|.|:::|...|..||:||.:....|..||                   .||..:|..||
  Fly    64 YRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEE 128

 Worm   191 K------EEEKVDDTTFDKLMC-GKLRRRMWTFLERPGSSMQAKAFELSSTLFVAISVMGLSFGT 248
            :      .||.:.:   .:|.| .:::.::|...:.|.||..||.....|..|:.:||:.....|
  Fly   129 QIARLFGFEEALSN---GELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKT 190

 Worm   249 IPDFQV-----------------------------THLMPPHNETVVLPNGT------------- 271
            .|.|:|                             ||..  |..::..|:|:             
  Fly   191 HPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQY--HQHSITPPSGSIGPTFRVTNYTSY 253

 Worm   272 -------------VTVVQKVEQMRVE----------------------------------HPAFV 289
                         :..::..::.|::                                  |.||.
  Fly   254 SSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFF 318

 Worm   290 FTERICIAFFTVEYCLRFFAAPRKLRFALKPLNLVDLLAIVPFYLELLLTLCGVDDRKLRDLRWA 354
            :.|.:|..:|.:|..:|...:|...:|...|:|::|..|.:.||.:::..:     .:...|..|
  Fly   319 YVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRM-----GEYTGLLEA 378

 Worm   355 FLVVRILRVLRVIRIIKLGRFSSGLQTFGMTLQRSQKQLQMMTIVLLTGVVFFSTMIYFLEK--D 417
            |.:|||:      |:.||.|.|.||:....|.:.|.|:|.::...|:.|:|||:::.|:.||  |
  Fly   379 FSIVRIM------RLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQD 437

 Worm   418 EEGTPFTSIPAAYWWCIVTMTTVGYGDAVPATTMGKIIASAAIMCGVLVLALPITIIVDNF 478
            .....|.|||...||.|||||||||||..|.|..|..:.:...:.|||.:|||:.:||.||
  Fly   438 NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNF 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exp-2NP_001367760.1 None
ShawlNP_001097131.2 BTB 7..99 CDD:197585 30/99 (30%)
BTB_2 7..97 CDD:280393 29/97 (30%)
Ion_trans 307..506 CDD:278921 72/203 (35%)
Ion_trans_2 <449..499 CDD:285168 26/50 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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