DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment C49C3.10 and rl

DIOPT Version :9

Sequence 1:NP_001255939.1 Gene:C49C3.10 / 178518 WormBaseID:WBGene00008200 Length:384 Species:Caenorhabditis elegans
Sequence 2:NP_001015122.1 Gene:rl / 3354888 FlyBaseID:FBgn0003256 Length:376 Species:Drosophila melanogaster


Alignment Length:385 Identity:114/385 - (29%)
Similarity:188/385 - (48%) Gaps:58/385 - (15%)


- Green bases have known domain annotations that are detailed below.


 Worm     6 EFQQPN-----GTFFTVPVRYVNVQPF-QFDKPFVVHAFDQVLGRPVVIKKVMLPDSLHDRQPW- 63
            |..|.|     |..|.|..||:.:... :.....||.|.|.:..:.|.|||:    |..:.|.: 
  Fly    18 EVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKI----SPFEHQTYC 78

 Worm    64 RRAQRELNCMLNIEDDNVVKMYSTFTPAENPLKMTEFYIVREYMHGTMKNLSASTFNEGGHRTVK 128
            :|..||:..:...:.:|::.:..... .::..:|.:.|||:..|...:..|..:......|  :.
  Fly    79 QRTLREITILTRFKHENIIDIRDILR-VDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDH--IC 140

 Worm   129 SIFFDICRGVQYLHAMRISHRDLKPENILMNQEGDVKLCDFGHSNKEDPTSN-----TPYIVQRF 188
            ...:.|.||::|:|:..:.||||||.|:|:|:..|:|:||||.:...||..:     |.|:..|:
  Fly   141 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRW 205

 Worm   189 YRAPEIICETTDNNKTNVDIWSLGCILAELLTGHVLFRGKDHIDQFILMVQFLGNAGPS---FYS 250
            ||||||:..:....| ::||||:||||||:|:...:|.||.::||...::..||:  ||   ...
  Fly   206 YRAPEIMLNSKGYTK-SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGS--PSRDDLEC 267

 Worm   251 QMNEHARNFLLRYNLDQYQAPINFYSRFPDTVFQGVLQFEPKECD-MSRDLLFRMLVINPDDRLN 314
            .:||.|||:|...   .::..:.:...||:             .| ::.|||.:||..||..|:.
  Fly   268 IINEKARNYLESL---PFKPNVPWAKLFPN-------------ADALALDLLGKMLTFNPHKRIP 316

 Worm   315 IQMVLSHPYLREIW---GEIVAE----------DVIPEPQPP---NELLRFFDFQPYSSP 358
            ::..|:||||.:.:   .|.|||          |:..:....   .|.|:|.:.||.::|
  Fly   317 VEEALAHPYLEQYYDPGDEPVAEVPFRINMENDDISRDALKSLIFEETLKFKERQPDNAP 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C49C3.10NP_001255939.1 PKc_like 33..367 CDD:389743 106/352 (30%)
rlNP_001015122.1 STKc_ERK1_2_like 32..366 CDD:270839 105/359 (29%)
S_TKc 38..326 CDD:214567 94/313 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D741207at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.