DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ced-3 and Dronc

DIOPT Version :9

Sequence 1:NP_001255708.1 Gene:ced-3 / 178272 WormBaseID:WBGene00000417 Length:503 Species:Caenorhabditis elegans
Sequence 2:NP_524017.1 Gene:Dronc / 39173 FlyBaseID:FBgn0026404 Length:450 Species:Drosophila melanogaster


Alignment Length:513 Identity:116/513 - (22%)
Similarity:192/513 - (37%) Gaps:156/513 - (30%)


- Green bases have known domain annotations that are detailed below.


 Worm    27 LEVLIAKQVLNSDNGDMINSCGTVREKRREIVKAVQRRGDVAFDAFYDALRSTGHEGLAEVLEPL 91
            :::|...|.||....:|......|.:.||.::|..| ||..|::...:|||:......|.:||  
  Fly    46 VQMLRNTQDLNGKPFNMDEKDVRVEQHRRLLLKITQ-RGPTAYNLLINALRNINCLDAAVLLE-- 107

 Worm    92 ARSVDSNAVEFECPMSPASHRRSRALSPAGYTSPTRVHRDSVSSVSSFTSYQDIYSRARSRSRSR 156
              |||.:  :...|....:.||:           :|...|.|.:.|...|               
  Fly   108 --SVDES--DSRPPFISLNERRT-----------SRKSADIVDTPSPEAS--------------- 142

 Worm   157 ALHSSDRHNYSSPPVNAFPSQPSSANSSFTGCSSLGYSSSRNRSFSKASGPTQYIFHEEDMNFVD 221
                      ..|.|:...::|..|.:.:.|                               .||
  Fly   143 ----------EGPCVSKLRNEPLGALTPYVG-------------------------------VVD 166

 Worm   222 APTI----------SRVFDEKTMYRNFSSPRGMCLIIN-NEHFEQMPTRNGTKADKDNLTNLFRC 275
            .|.:          |.:.....|...|:  ||:.|::| .::.:|...|.|.:.|..:|.:||:.
  Fly   167 GPEVKKSKKIHGGDSAILGTYKMQSRFN--RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQE 229

 Worm   276 MGYTVICKDNLTGRGM--LLTIRDFAKHESHGDSAILVILSHGEENVIIGVDDIP------ISTH 332
            :.:|:....|:.....  |||:...:.:..:.:..::|:::||  |.:.|.:.:.      :...
  Fly   230 LNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVMVLMTHG--NSVEGKEKVEFCDGSVVDMQ 292

 Worm   333 EIYDLLNAANAPRLANKPKIVFVQACRGERRDNGFP-----VLDSV-------------DGVPAF 379
            :|.|....|..|.|.||||::....|||:..|.|.|     :::.|             :|:|: 
  Fly   293 KIKDHFQTAKCPYLVNKPKVLMFPFCRGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPS- 356

 Worm   380 LRRGWDNRDGPLFNFLGCVRPQVQQVWRKKPSQADILIAYATTAQYVSWRNSARGSWFIQAVCEV 444
                      |..|.               ||.||.|:.||.|..||:.|:...|||:||..|:|
  Fly   357 ----------PSTNV---------------PSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQV 396

 Worm   445 FSTHAKDMDVVELLTEV-----NKKVACG-FQTSQGSNILKQMPEMTSRLLKKFYFWP 496
            .:.||.|.|:.::|.:.     ||:...| .||....|:         ...||.||.|
  Fly   397 MADHAHDTDLEDILKKTSEAVGNKRTKKGSMQTGAYDNL---------GFNKKLYFNP 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ced-3NP_001255708.1 CARD 2..90 CDD:128424 18/62 (29%)
CASc 235..496 CDD:214521 75/293 (26%)
DroncNP_524017.1 CARD 18..106 CDD:260018 17/60 (28%)
CASc 186..443 CDD:237997 74/295 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162604
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1092723at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10454
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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