DRSC/TRiP Functional Genomics Resources

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Protein Alignment rbm-34 and eIF4B

DIOPT Version :10

Sequence 1:NP_502291.1 Gene:rbm-34 / 178148 WormBaseID:WBGene00008688 Length:394 Species:Caenorhabditis elegans
Sequence 2:NP_001015319.1 Gene:eIF4B / 3355041 FlyBaseID:FBgn0020660 Length:459 Species:Drosophila melanogaster


Alignment Length:139 Identity:29/139 - (20%)
Similarity:61/139 - (43%) Gaps:22/139 - (15%)


- Green bases have known domain annotations that are detailed below.


 Worm   249 FVGNLPFEITEDALITFFSAQIGPVEAVRIV------RDKDTGKGKGFAFVNFKQDSSVSLALSM 307
            ::.||||:..||.|..||       |.:.::      .|.:.|:.:||.:|..:....:...||:
  Fly    83 YINNLPFDANEDDLYEFF-------EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSL 140

 Worm   308 ETIKMEKRDLRITKVMKKGHLTKIQTAKKRTSHGKKNQNEITGKLHK--------FKFSTKKERT 364
            ....::.|.:||....:....::.::.::....|....|..:|...:        |.:|:..||:
  Fly   141 PDPSIKGRRIRIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSSNFERS 205

 Worm   365 TEQNDRRAL 373
            ..: :|::|
  Fly   206 FNR-ERKSL 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rbm-34NP_502291.1 RRM1_RBM34 144..233 CDD:409828
RRM2_RBM34 248..320 CDD:409829 19/76 (25%)
eIF4BNP_001015319.1 RRM_eIF4B 78..159 CDD:409836 20/82 (24%)
Blue background indicates that the domain is not in the aligned region.

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