DRSC/TRiP Functional Genomics Resources

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Protein Alignment Msx2 and ro

DIOPT Version :10

Sequence 1:NP_038629.2 Gene:Msx2 / 17702 MGIID:97169 Length:267 Species:Mus musculus
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:186 Identity:54/186 - (29%)
Similarity:78/186 - (41%) Gaps:58/186 - (31%)


- Green bases have known domain annotations that are detailed below.


Mouse    58 PP-----KESPAVPPDCASAGAVLRPLLLPGHGVRDAHSPGPLVKPFETASVKSENSEDGAPWIQ 117
            ||     |.|...||...:||....|:|        .|:                          
  Fly   132 PPQLVHQKLSYVSPPPAIAAGGAANPVL--------PHA-------------------------- 162

Mouse   118 EPGRYSPPPRHMSPTTCTL----RKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSS 178
            .|..:...|...:..:..|    ||....|:.||.|:|.|.|.||.:|.:.:|:|.:.|.|.:.:
  Fly   163 FPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAET 227

Mouse   179 LNLTETQVKIWFQNRRAKAKRLQEAELEK---------------LKMAAKPMLPSG 219
            |.|||||:||||||||||.||:::|::::               :..||..|.|.|
  Fly   228 LRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGG 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Msx2NP_038629.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..132 2/27 (7%)
Homeodomain 143..199 CDD:459649 30/55 (55%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 28/51 (55%)
Blue background indicates that the domain is not in the aligned region.

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