DRSC/TRiP Functional Genomics Resources

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Protein Alignment vab-7 and NK7.1

DIOPT Version :10

Sequence 1:NP_499401.1 Gene:vab-7 / 176521 WormBaseID:WBGene00006873 Length:247 Species:Caenorhabditis elegans
Sequence 2:NP_650357.2 Gene:NK7.1 / 41747 FlyBaseID:FBgn0024321 Length:721 Species:Drosophila melanogaster


Alignment Length:386 Identity:76/386 - (19%)
Similarity:141/386 - (36%) Gaps:98/386 - (25%)


- Green bases have known domain annotations that are detailed below.


 Worm    10 PSSLCTVENYV-----DNVD-----------LSDTQLVQTVR--------KALTSVKTGDSDLYS 50
            |||| |::.||     ||.|           :..|.::||.:        .||...:..|.....
  Fly   907 PSSL-TLKPYVLQYLGDNADEWQRPFHGTARICQTNMIQTFKYGGRKVLLNALEVQQITDGCQLR 970

 Worm    51 EMVGVMARD--IKEFKDPDVVAQLETVLKALSGAVACIDVLHHQKLLSALFRMKLWDH----RPD 109
            .....:::|  :.:...|..||  |.:::.|...:. :..||.|:..|..:.:....|    :.|
  Fly   971 RQAFYISKDHNVSQTLRPITVA--EEMIQELCNLLN-VRSLHEQQEFSLCYTVGKDKHLNYCKND 1032

 Worm   110 --VMDALVN----------------LVISLAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRIL 156
              :||.:..                .|..|...:..|:||..:.::.:::....:..| |..::.
  Fly  1033 NYLMDIITESEHKKLPFQFYLKRTVWVHPLRYDNAAYIDSMFDQVIDDYLRGSLISTN-SLGQLT 1096

 Worm   157 NKKIDVLSRVHAALLKISILVPLTPSRL-VPMLFQQMPK-----MHKKDHSIVIYVESLLKLENS 215
            ....:.:.::.|.|.   :|:|..|..| ...|.|.:||     .|:....:|..:...||:   
  Fly  1097 AATTEEIIKLAAYLF---LLLPDNPKGLNAKTLPQIVPKSVIEPKHRHQEEMVTRISRQLKM--- 1155

 Worm   216 SIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFDMELEDAAEGTMNDGDELPVGPLKQ 280
                .||         |:|..:.:..:.::.....:.|:....|:...|    :|.:||...|  
  Fly  1156 ----FGG---------RMRPAEAKSHFLELLSTWPTFGVLHYRLKSVVE----NGHQLPEVIL-- 1201

 Worm   281 DTSDGSIVSKLLDKLMVVAFEHLESCQNDGRLDQV--FESLFKS---FENFILNTYKSKFT 336
             |.:.|.:..|..|...|..|.        ..||:  .||:.|:   ....::||.:.:.|
  Fly  1202 -TINKSGIQLLQPKSKEVFKER--------NYDQIVSVESIRKTAYKIVRLVINTMQGEET 1253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vab-7NP_499401.1 Homeodomain 69..125 CDD:459649 14/77 (18%)
NK7.1NP_650357.2 Homeodomain 394..450 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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